DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment E(spl)mbeta-HLH and her2

DIOPT Version :10

Sequence 1:NP_524505.2 Gene:E(spl)mbeta-HLH / 43152 FlyBaseID:FBgn0002733 Length:195 Species:Drosophila melanogaster
Sequence 2:XP_073771585.1 Gene:her2 / 30300 ZFINID:ZDB-GENE-980526-274 Length:133 Species:Danio rerio


Alignment Length:181 Identity:46/181 - (25%)
Similarity:74/181 - (40%) Gaps:64/181 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 KVMKPMLERKRRARINKCLDELKDIMVECLTQEGEHITRLEKADILELTVEHMKKLRAQKQLRLS 79
            |:.||::|:.||.|||||:::|| |:::...:..:..::||||||||:.|.::|. .|....|..
Zfish    17 KLRKPVVEKMRRDRINKCIEQLK-ILLKTEIKASQPCSKLEKADILEMAVIYLKN-TADAHARSY 79

  Fly    80 SVTGGVSPSADPKLSIAESFRAGYVHAANEVSKTLAAVPGVSVDLGTQLMSHLGHRLNYLQVVVP 144
            |.            :.|:|:..||.....|.::.|:|                 |:    |....
Zfish    80 SE------------AHAQSYADGYSRCIEETARFLSA-----------------HK----QTQKH 111

  Fly   145 SLPIGVPLQAPVEDQAMVTPPPSECDSLESGACSPAPSEASSTSGPMWRPW 195
            |.|:         |...:|                  ||.:...  :||||
Zfish   112 SKPV---------DSCQIT------------------SEIAKHG--LWRPW 133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E(spl)mbeta-HLHNP_524505.2 bHLH-O_ESMB_like 7..75 CDD:381584 25/59 (42%)
ORANGE 97..141 CDD:128787 7/43 (16%)
her2XP_073771585.1 None

Return to query results.
Submit another query.