DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment E(spl)mbeta-HLH and her3

DIOPT Version :10

Sequence 1:NP_524505.2 Gene:E(spl)mbeta-HLH / 43152 FlyBaseID:FBgn0002733 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_571155.1 Gene:her3 / 30289 ZFINID:ZDB-GENE-980526-204 Length:229 Species:Danio rerio


Alignment Length:234 Identity:67/234 - (28%)
Similarity:103/234 - (44%) Gaps:61/234 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SKTYQYRKVMKPMLERKRRARINKCLDELKDIMVECLTQEGEHITRLEKADILELTVEHMKKLRA 72
            :|....:||.||::|:||||||||||::||.:: |..........:|||||||||||:|::.|:.
Zfish    11 AKPQNVKKVSKPLMEKKRRARINKCLNQLKSLL-ESACSNNIRKRKLEKADILELTVKHLRHLQN 74

  Fly    73 QKQLRLSSVTGGVSPSADPKLSIAESFRAGYVHAANEVSKTLAAVPGVSVDLGTQLMSHLGHRLN 137
            .|:        |:|.:.|     :..:.|||....|.||..|.| .....|..:.::::|...||
Zfish    75 TKR--------GLSKACD-----SAEYHAGYRSCLNTVSHYLRA-SDTDRDSRSIMLTNLTSGLN 125

  Fly   138 YLQV--------------VVPSL---PIGVPLQAPV---------EDQAMVTPPPSECD-----S 171
            :.:|              .:||.   |..||::..|         |.:..:.|..:|..     |
Zfish   126 HNRVPDFSTVESDPALIFTLPSTLRRPHKVPIRTDVSYSSFQQTAERKVCLMPKRTEIGDSDRMS 190

  Fly   172 LESGACSPAPSEASST---------------SGPMWRPW 195
            |::...|....:|.:|               ....||||
Zfish   191 LDAALRSQESKKAETTHFRPKDLKVIECCIFKQNYWRPW 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E(spl)mbeta-HLHNP_524505.2 bHLH-O_ESMB_like 7..75 CDD:381584 32/66 (48%)
ORANGE 97..141 CDD:128787 12/43 (28%)
her3NP_571155.1 bHLH_SF 24..78 CDD:469605 28/62 (45%)
ORANGE 88..129 CDD:128787 12/41 (29%)

Return to query results.
Submit another query.