DRSC/TRiP Functional Genomics Resources

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Protein Alignment E(spl)mbeta-HLH and ref-1

DIOPT Version :10

Sequence 1:NP_524505.2 Gene:E(spl)mbeta-HLH / 43152 FlyBaseID:FBgn0002733 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_496204.1 Gene:ref-1 / 174585 WormBaseID:WBGene00004334 Length:367 Species:Caenorhabditis elegans


Alignment Length:230 Identity:46/230 - (20%)
Similarity:84/230 - (36%) Gaps:74/230 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 RKVMKPMLERKRRARINKCLDELKDIMVECLTQEGEHITRLEKADILELTVEHMKKLRAQKQLRL 78
            ||.:|...|:.||.|..:..|.||:.::|........:.::::.:.|::.:.:::..:.....| 
 Worm   163 RKEVKKNREQDRRDRQGEAFDALKNFIIENKLMTSHQVEKMQRLNTLDIIIAYIQNKKHNFVSR- 226

  Fly    79 SSVTGGVSPSADPKLSIAESFRAGYVHAANEVSKTLAAVPGVSVDLGTQLMS---HLGHRLNYLQ 140
                      :|.:.|:       |.||..|..||       :.::..|...   ||..|...|:
 Worm   227 ----------SDQEQSL-------YAHAIAEGKKT-------AKNIAFQFFKSDRHLVVRCADLE 267

  Fly   141 VV------------VPSLPIGVP----------------------LQAPVEDQ----AMVTPPPS 167
            ..            .||:||.:|                      ..:|...|    ::.:||||
 Worm   268 KFFEFSLSPKPLFGFPSMPIPIPPPSFPIFPFRPFPFFPMPMAPMATSPKSQQSPSYSLDSPPPS 332

  Fly   168 ECDSLESGACSPAPSEASSTSGP-------MWRPW 195
            . |:..|...:|:....:|.|.|       ::|||
 Worm   333 S-DTSSSSIETPSTPNENSNSNPKASRKSKLFRPW 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E(spl)mbeta-HLHNP_524505.2 bHLH-O_ESMB_like 7..75 CDD:381584 12/60 (20%)
ORANGE 97..141 CDD:128787 11/46 (24%)
ref-1NP_496204.1 HLH 20..66 CDD:197674
HLH 170..217 CDD:197674 9/46 (20%)
Blue background indicates that the domain is not in the aligned region.

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