DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment E(spl)mdelta-HLH and her4.1

DIOPT Version :9

Sequence 1:NP_524503.2 Gene:E(spl)mdelta-HLH / 43150 FlyBaseID:FBgn0002734 Length:173 Species:Drosophila melanogaster
Sequence 2:NP_001096598.1 Gene:her4.1 / 100149863 ZFINID:ZDB-GENE-980526-521 Length:152 Species:Danio rerio


Alignment Length:168 Identity:44/168 - (26%)
Similarity:70/168 - (41%) Gaps:45/168 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 KVTKPLLERKRRARMNLYLDELKDLIVDTMDAQGEQVSKLEKADILELTVNYLKAQQQQRVANPQ 81
            |:.||::|:.||.|:|..:::||.|:......| :..|:.|||||||:|:::|:..|:...|.. 
Zfish    19 KLRKPMVEKIRRERINSSIEKLKTLLAQEFIKQ-QPDSRQEKADILEMTLDFLRRSQKSSAAGD- 81

  Fly    82 SPPPDQVNLDKFRAGYTQAAYEVSHIFSTVPGLDLKFGTHLMKQLGHQLKDMKQEEEIIDMAEEP 146
                          |.::...|.....|..| :..:..|.|||...|.              :.|
Zfish    82 --------------GRSRCVQEAVSFLSQCP-VQTQSHTRLMKLFLHM--------------QTP 117

  Fly   147 VNLADQ-KRSKSPREEDIHHG----------EEVWRPW 173
               ||| .|..:|:..:.|..          ..:||||
Zfish   118 ---ADQHTRVDNPQTTETHANSSAKQHTPARSHIWRPW 152

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E(spl)mdelta-HLHNP_524503.2 bHLH-O_ESMB_like 9..77 CDD:381584 23/59 (39%)
ORANGE 91..135 CDD:128787 9/43 (21%)
her4.1NP_001096598.1 HLH 19..75 CDD:238036 22/56 (39%)
ORANGE 77..123 CDD:128787 14/78 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170573764
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1378299at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.850

Return to query results.
Submit another query.