DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nf1 and raskol

DIOPT Version :10

Sequence 1:NP_733132.2 Gene:Nf1 / 43149 FlyBaseID:FBgn0015269 Length:2802 Species:Drosophila melanogaster
Sequence 2:NP_001285388.1 Gene:raskol / 32754 FlyBaseID:FBgn0261570 Length:2016 Species:Drosophila melanogaster


Alignment Length:436 Identity:116/436 - (26%)
Similarity:179/436 - (41%) Gaps:66/436 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly  1197 LGANIDSGLMHSIDLGYNPDLQTRAAFMEVLTQILQQGTEFDTLAETVLADRFEQLVQLVTMISD 1261
            ||.....|...|.|....|.|:.:..|..  |.||......:.|  |.|.:.::::.:       
  Fly   840 LGRTSGGGGSGSKDKEQLPTLRIKCRFQS--TDILPINVYGNFL--TYLKENYKRVCE------- 893

  Fly  1262 KGELPIAMALANVVTTSQMDELARVLVTLFDAKHLLSPLLWNMFYRE-VEVSDCMQTLFRGNSLG 1325
                    .|..|:.....:::.:.||.|..|:.|....|.::...: :.|.| .:..||||||.
  Fly   894 --------TLEPVIGVKAKEDIGQALVLLMHAQGLAGAFLTDVVALDLLRVGD-QRLTFRGNSLA 949

  Fly  1326 SKIMAFCFKIYGASYLQMLLEPLIRPLLDEEEETCFEVDPARLDPTE--DIEQHRNNLIALTQKV 1388
            :|.|....|:.|..|||..|...|..|:..|.: | ||||.:...:.  .:::.:..|....:..
  Fly   950 TKSMEAFLKLTGEQYLQDTLSAPINELIQSERD-C-EVDPTKTSGSSAGSLQRQQAALRGAVRGA 1012

  Fly  1389 FDAIINSSDRFPPQLRSMCHCLYQVLSKRFPNL----LQNNIGAVGTVIFLRFINPAIVSPQELG 1449
            :..|..|...||.|||: |...::   :|...|    :.:|:  :...|||||:.|||:||....
  Fly  1013 WQCIFESHKHFPAQLRN-CFATFR---ERLQQLGRQDMADNL--ISASIFLRFLCPAILSPSLFN 1071

  Fly  1450 IVDKQVHSSAKRGLMLMSKILQNIANHVEF-SKEQHMLCFNDFLRDHFEAGR-RFFIQIAS---D 1509
            |..:...:.|.|.|.|::|.||.:||...| .||..|...||||..  ||.| :.|::|.|   :
  Fly  1072 ITSELPSARATRNLTLVAKTLQTLANFTRFQGKENFMEFLNDFLEQ--EAARMQQFLEIISTRPE 1134

  Fly  1510 CETVDQTSHSMSFISDANVLA-LHRLLWTHQEKIGDYLSSSRDHK---------AVGRRPFDKMA 1564
            ....|.......:|.....|: ||.||.....|    |..:|.|:         .:.|.....|.
  Fly  1135 HPAPDSILDWAGYIDQGKQLSILHSLLSESLAK----LPEARQHELDPLQHILDEISRAKEHGMG 1195

  Fly  1565 TLLAYLGPPEHKPVDS--HMMFSSYAR----WSSIDMSSTNFEEIM 1604
            |.|    |..:.|..|  |.:.|....    .||...:.:|.|:::
  Fly  1196 TAL----PGGYLPATSSTHSIASENQENRNPGSSGSHAGSNSEQLL 1237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nf1NP_733132.2 RasGAP_Neurofibromin 1242..1575 CDD:213332 96/354 (27%)
CRAL_TRIO_2 1633..1767 CDD:463965
PH_NF1 1759..1868 CDD:270123
MOR2-PAG1_mid <1931..>2086 CDD:433790
raskolNP_001285388.1 PH_RasSynGAP-like 615..729 CDD:270082
C2_SynGAP_like 721..874 CDD:175980 11/35 (31%)
RasGAP_DAB2IP 865..1192 CDD:213338 97/360 (27%)
DUF3498 <1927..1997 CDD:463427
Blue background indicates that the domain is not in the aligned region.

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