DRSC/TRiP Functional Genomics Resources

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Protein Alignment boss and gprc5c

DIOPT Version :9

Sequence 1:NP_542440.1 Gene:boss / 43146 FlyBaseID:FBgn0000206 Length:896 Species:Drosophila melanogaster
Sequence 2:NP_001103183.1 Gene:gprc5c / 563405 ZFINID:ZDB-GENE-070928-27 Length:429 Species:Danio rerio


Alignment Length:414 Identity:93/414 - (22%)
Similarity:165/414 - (39%) Gaps:90/414 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   523 WRIKMDTWVATGLTAAILGLIATLAILVFIVV---RISLGDVFEGNPTTSILLLLSLILVFCSFV 584
            |.:.::.:.|.||.|:::.||..||.|.||..   |.|.|             |.::.|:| :|.
Zfish    52 WGVVVEAFAAAGLVASLILLIVLLASLPFINSKNWRSSFG-------------LHTVFLIF-TFG 102

  Fly   585 PYSIEYVGEQRNSHVTFEDAQTLNTLCAVRVFIMTLVYCFVFSLLLCRAVMLASIGSEGGFLSHV 649
            .:::.:......:..|          ||.|.|:..:::...||.||.:||.|..:....   |..
Zfish   103 LFALTFAFIVGKNFAT----------CASRRFLFGVLFAGCFSCLLMQAVRLNILARRN---SGP 154

  Fly   650 NGYIQAVICAFSVVAQVGMSVQLLVVMHVASE-----------TVSCENIYYGRWLWGLLAYDFA 703
            .|::..:......:.:|.::.:.|::..|...           .:.| ||....::..|:.....
Zfish   155 RGWVWCLGALGLWLVEVVINTEWLIITIVRYPVNITGTIAPVLAIPC-NIANQDFVMALIYVLNL 218

  Fly   704 LLCCVGALIPSIYRSQRNYR-EGILIVIGSVLIMVIWVAWIALSLFGD------EWRDAAIPLGL 761
            ||..|.|.:|.:....:.:| :|.||::..:|.:.||||||.:.:.|:      .|.|..:.:.|
Zfish   219 LLAVVVASVPIMAGKHKQWRKDGALILVTGLLSVGIWVAWIVMYVSGNAKNGGPTWDDPTLAIAL 283

  Fly   762 QASGWAVLVGILIPRTFLIVRGIERSDIAQAL-PS----------LTSLAFAQNNQYSSEQ---- 811
            .::.|..|:...:|....:....|...:|:.: ||          .....|.:|..:|.::    
Zfish   284 VSNAWVFLLLHTVPAVCSLSEEGEDEPVAEDMYPSRGYENMLKEQSAQNIFMENKAFSMDEPNAG 348

  Fly   812 ----SVYECVNPAMRHCSQDEVNHQSPSEIPTLPLRGGGPRRQQFFANLRQANANINPQR---PP 869
                |.|...|..:|.|.      ..|:|:..: .:|.|        |..::..|:.|:.   .|
Zfish   349 NKPVSPYSGYNGQLRSCV------YQPTELAII-TKGTG--------NQLESYDNVIPRASTGTP 398

  Fly   870 PRPQQSPSRSSVSSLPPSPDHNKI 893
            || .||.|.|..:.|   .|..||
Zfish   399 PR-AQSGSTSPTTQL---EDMRKI 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bossNP_542440.1 7tm_3 <692..779 CDD:278433 24/93 (26%)
gprc5cNP_001103183.1 7tmC_RAIG3_GPRC5C 51..304 CDD:320404 63/279 (23%)
TM helix 1 51..76 CDD:320404 7/23 (30%)
TM helix 2 90..111 CDD:320404 5/34 (15%)
TM helix 3 120..144 CDD:320404 9/23 (39%)
TM helix 4 161..177 CDD:320404 1/15 (7%)
TM helix 5 204..230 CDD:320404 6/25 (24%)
TM helix 6 240..263 CDD:320404 10/22 (45%)
TM helix 7 273..298 CDD:320404 5/24 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
00.000

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