DRSC/TRiP Functional Genomics Resources

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Protein Alignment boss and gprc5cl1

DIOPT Version :10

Sequence 1:NP_542440.1 Gene:boss / 43146 FlyBaseID:FBgn0000206 Length:896 Species:Drosophila melanogaster
Sequence 2:NP_001011349.1 Gene:gprc5cl1 / 496814 XenbaseID:XB-GENE-990339 Length:432 Species:Xenopus tropicalis


Alignment Length:115 Identity:25/115 - (21%)
Similarity:39/115 - (33%) Gaps:27/115 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 CHIPMEPAFCNR-------TRDVLIETARGIGLGVHEKGTVVTIEGPRFSSKAESNLFR----QW 183
            |.||..| .|:|       ||:.|....:     |....|:..|:          |||.    ||
 Frog    10 CGIPAIP-HCSRVEILDAKTREKLCFLDK-----VEPHATIAEIK----------NLFTKTHPQW 58

  Fly   184 GADLVNMTLVPEVVLAKEAGLCYAAIAMATDYDCWREAGEDVNVADVLAT 233
            .....::.|.|:....|:..:........|....:|:.|..::...|..|
 Frog    59 YPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDLGAQISWVTVFLT 108

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bossNP_542440.1 7tmC_Boss 529..782 CDD:320170
TM helix 1 529..554 CDD:320170
TM helix 2 566..587 CDD:320170
TM helix 3 612..636 CDD:320170
TM helix 4 656..672 CDD:320170
TM helix 5 690..716 CDD:320170
TM helix 6 724..747 CDD:320170
TM helix 7 751..776 CDD:320170
gprc5cl1NP_001011349.1 7tmC_RAIG3_GPRC5C 53..299 CDD:320404 10/56 (18%)
TM helix 1 53..78 CDD:320404 5/24 (21%)
TM helix 2 92..113 CDD:320404 4/17 (24%)
TM helix 3 122..146 CDD:320404
TM helix 4 163..179 CDD:320404
TM helix 5 198..224 CDD:320404
TM helix 6 234..257 CDD:320404
TM helix 7 268..293 CDD:320404
Blue background indicates that the domain is not in the aligned region.

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