DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5948 and SOD1

DIOPT Version :9

Sequence 1:NP_651440.1 Gene:CG5948 / 43133 FlyBaseID:FBgn0039386 Length:270 Species:Drosophila melanogaster
Sequence 2:NP_012638.1 Gene:SOD1 / 853568 SGDID:S000003865 Length:154 Species:Saccharomyces cerevisiae


Alignment Length:169 Identity:55/169 - (32%)
Similarity:76/169 - (44%) Gaps:36/169 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 QAGAKLMGDGEGAGVAGMISFVQLPYNSDIRVTINVTG-LPPGKHALHIHTFGDLSDGCKSTGGQ 157
            ||.|.|.||   |||:|::.|.|...:....|:..:.| .|..:...|||.|||.::||.|.|..
Yeast     3 QAVAVLKGD---AGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGPH 64

  Fly   158 FPNNF----------------LGNVDTKDDGSISAVFQSIYLQLFGINGIVGRSIVIHSKAIDLN 206
            | |.|                :|||.|.::|.....|:...::|.|...:||||:|||:...||.
Yeast    65 F-NPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLG 128

  Fly   207 TALNAEVFSSSLQAMPNPLAYQNEENSLGPAIACGVISI 245
            .....|    ||:.           .:.||..|||||.:
Yeast   129 KGDTEE----SLKT-----------GNAGPRPACGVIGL 152

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5948NP_651440.1 Sod_Cu 108..243 CDD:278508 45/151 (30%)
SOD1NP_012638.1 Sod_Cu 14..149 CDD:395033 44/150 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2032
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S341
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10003
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.860

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