DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5948 and sod-1

DIOPT Version :9

Sequence 1:NP_651440.1 Gene:CG5948 / 43133 FlyBaseID:FBgn0039386 Length:270 Species:Drosophila melanogaster
Sequence 2:NP_001021956.1 Gene:sod-1 / 174141 WormBaseID:WBGene00004930 Length:180 Species:Caenorhabditis elegans


Alignment Length:177 Identity:50/177 - (28%)
Similarity:72/177 - (40%) Gaps:33/177 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 LVPQWQAGAKLMGDG----EGAGVAGMISFVQLPYNSDIRVTINVTGLPPGKHALHIHTFGDLSD 149
            :.||.:|..|:....    .|..|.|.|...|...|....:...:.||.||.|..|:|.:||.::
 Worm    13 IFPQVEAAQKMSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTN 77

  Fly   150 GCKSTGGQFPNNF----------------LGNVDTKDDGSISAVFQSIYLQLFGINGIVGRSIVI 198
            ||.|.|..| |.|                ||||:...||..........:.|:|.|.:||||:|:
 Worm    78 GCISAGPHF-NPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVV 141

  Fly   199 HSKAIDLNTALNAEVFSSSLQAMPNPLAYQNEENSLGPAIACGVISI 245
            |:...||...:..:...|            .:..:.|...|||||::
 Worm   142 HAGQDDLGEGVGDKAEES------------KKTGNAGARAACGVIAL 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5948NP_651440.1 Sod_Cu 108..243 CDD:278508 43/150 (29%)
sod-1NP_001021956.1 Cu-Zn_Superoxide_Dismutase 26..171 CDD:238186 41/157 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S341
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1574423at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10003
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.970

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