DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lnk and Fes

DIOPT Version :9

Sequence 1:NP_001287536.1 Gene:Lnk / 43130 FlyBaseID:FBgn0028717 Length:728 Species:Drosophila melanogaster
Sequence 2:NP_001101958.1 Gene:Fes / 361597 RGDID:1564385 Length:822 Species:Rattus norvegicus


Alignment Length:626 Identity:127/626 - (20%)
Similarity:198/626 - (31%) Gaps:218/626 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 EEFCERHA----------RVAASDFAKACITYINGNLPPEEARNIQHRSFAQ-KFVES---FSAH 119
            :|..:.|:          |....|.|:|...|       :||...:.|..|: |:|.|   ..||
  Rat   125 QELTKTHSQDIEKLKSQYRTLTRDSAQARRKY-------QEASKDKDRDKAKDKYVRSLWKLFAH 182

  Fly   120 YDTEFFKRRSTLKSGAGSLDFEEEHE--VPKLLSKSLLRRLSFKGLRKGKISLLQAFFHKNSDDL 182
            ::      |..|...|..|..:..|:  :|.||...........|:.|   .:||.:...:|...
  Rat   183 HN------RYVLGVRAAQLHHQHYHQFMLPGLLQSLQDLHEEMAGILK---DILQEYLEISSLVQ 238

  Fly   183 DGSGGSGKQSKTKLAKIVVE------CRKEGTVNNLTPESLDQPTGSQKWEKCRLVLVKAVGGYM 241
            |......::.....|:|..|      .|:.|:..::.|              |            
  Rat   239 DDVASIHRELAAAAARIQPEFEYLGFLRQYGSAPDVPP--------------C------------ 277

  Fly   242 LEFYTPHKATKPRSGVFCFLISEARETTALEMPD-RLNTFVLKA---------DNNMEYVIEAES 296
                            ..|.:|...|...||..| :||...|::         |.......|..|
  Rat   278 ----------------VTFDVSLLEEGEQLEPGDLQLNELTLESVQHTLTSVTDELAVATKEVLS 326

  Fly   297 AEEMRSWLATIRYC--MRTPPTQQ-PTIESDGVMASAMQTSPTLPSPNPIGGIQNPQYQQQRGSN 358
            .:||.|.|.....|  ..|.|.:: ..:....|:..|||            |:|.....|.:   
  Rat   327 RQEMVSQLQRELQCEEQNTHPRERVQLLGKRQVLQEAMQ------------GLQVALCNQDK--- 376

  Fly   359 GNLVGGGAPLTSSLSADSALGQGGATSASELNVINELGTSPTSGPPDIPVRPHRGEQRLSASSNF 423
                         |.|...|.|         :.:.:|||..   ||.:|:..   :.|.|.||  
  Rat   377 -------------LQAQQELLQ---------SKMEQLGTGE---PPAVPLLQ---DDRHSTSS-- 411

  Fly   424 DGIEGTENDAD------------------------------VADLTAEMSVFPWFHGTLTRSEAA 458
                 ||.:.|                              |.::...:....|:||.:.|:|.|
  Rat   412 -----TEQERDGGRTPTLEIIKSHFSGIFRPKFSIPPPLQLVPEVQKPLHEQLWYHGAIPRAEVA 471

  Fly   459 RMVLHSDAAGHGYFLVRQSETRRGEFVLTFNFQGRAKHLRLTISEKGQCRVQHLWFPSIQEMLEH 523
            .::.||     |.||||:|:.:: |:||:..:.|:.:|..:..|: ...|::...||||..::.|
  Rat   472 ELLTHS-----GDFLVRESQGKQ-EYVLSVLWDGQPRHFIIQSSD-NLYRLEGDGFPSIPLLITH 529

  Fly   524 FRHNPIPLESGGTSDVTL------TEWVHSHSRLNDPTTAANHDSGQLNDLSTNGNGNGNGNGYD 582
            ...:..||..  .|.|.|      .:||..|..|                  ..|...|.||..:
  Rat   530 LLSSQQPLTK--KSGVVLFRAVPKDKWVLKHEDL------------------VLGEQIGRGNFGE 574

  Fly   583 NGQGSSTASNAAGGTASGAAGGGHPSPRHCNEVITMNLSVR 623
            ...|...|.|......|            |.|.:..:|..:
  Rat   575 VFSGRLRADNTPVAVKS------------CRETLPPDLKAK 603

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LnkNP_001287536.1 Phe_ZIP 67..125 CDD:286060 16/69 (23%)
PH_SH2B_family 202..313 CDD:269938 22/128 (17%)
PH 220..312 CDD:278594 18/103 (17%)
SH2_SH2B_family 438..534 CDD:198209 28/95 (29%)
FesNP_001101958.1 F-BAR_Fes 7..239 CDD:153369 29/129 (22%)
SH2_Fps_family 453..537 CDD:198224 26/90 (29%)
Pkinase_Tyr 561..814 CDD:285015 12/73 (16%)
PKc_like 564..815 CDD:304357 11/52 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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