DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lnk and Sh2b2

DIOPT Version :10

Sequence 1:NP_001287536.1 Gene:Lnk / 43130 FlyBaseID:FBgn0028717 Length:728 Species:Drosophila melanogaster
Sequence 2:NP_061295.2 Gene:Sh2b2 / 23921 MGIID:1345171 Length:621 Species:Mus musculus


Alignment Length:769 Identity:217/769 - (28%)
Similarity:325/769 - (42%) Gaps:226/769 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 TSSAAAAAAAGSDLIPAPIGTGNAMGVSSYAYGGTSWEEFCERHARVAASDFAKACITYINGNLP 96
            |.|:|||        |||:               ..|.:|||.||:|||.|||.....::..|  
Mouse     5 TPSSAAA--------PAPV---------------PDWRQFCELHAQVAAVDFAHKFCRFLRDN-- 44

  Fly    97 PEEARNIQHRSFAQKFVESFSAHYDTEFFKRRSTLKSGAGSLDFEEEHEVPKLLS-KSLLRRLSF 160
            |.........||::.|..:|.|.:..|.   |..|.|.|.:::.|     |.:.| .|.|:..::
Mouse    45 PTYDTPDAGTSFSRHFAANFLAVFSEEV---RRVLGSAADTMEPE-----PAVTSVTSALKTATY 101

  Fly   161 --------------------KGLRKGKISL-----LQAFFHKNSDDLDGSGGSGKQ--------- 191
                                ||.....:||     ::..:|:.|......|.:.|.         
Mouse   102 GHSRSSEDVSAHAATKARVRKGFSLRNMSLCVVDGVRDLWHRRSSPEPDGGATPKAAEPASEPRD 166

  Fly   192 --------SKTKLAKI-VVECRKEGTVN-NLTPESLDQPTGSQKWEKCRLVLVKAVGG--YMLEF 244
                    ::|..||: :|:.::||.:. .:..::...|.|:.:|:||||:|.:||.|  :.|||
Mouse   167 KWTRRLRLARTLAAKVELVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEF 231

  Fly   245 YTPHKATKPRSGVFCFLISEARETTALEMPDRLNTFVLKADNNMEYVIEAESAEEMRSWLATIRY 309
            :.|.||::|:..:....|.|.|.|..||||::.||||||.:|..||::|...:.:..||:|.|:.
Mouse   232 FVPPKASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQG 296

  Fly   310 CMRTPPTQQPT---IESDGVMAS-------AMQTSPTLPSP----NPIGGIQNPQYQQQRGSNGN 360
            |:....:::.|   ....|.:||       .:.|...:|.|    ..:|.:....:.:.|.:.|.
Mouse   297 CVDPGDSEEDTGLSCARGGCLASRVASCSCELLTDADMPRPPETTTAVGAVVTAPHGRARDTVGE 361

  Fly   361 LVGGGAPLTSSLSADSALGQGGATSASELNVINELGTSPTSGPPDIPVRPHRGEQRLSASSNFDG 425
            .: ...||.:.|....:.|                |.|..:.|.|                    
Mouse   362 SL-AHVPLETFLQTLESSG----------------GVSENNNPGD-------------------- 389

  Fly   426 IEGTENDADVADLTAEMSVFPWFHGTLTRSEAARMVLHSDAAGHGYFLVRQSETRRGEFVLTFNF 490
             ||.|.|.| |:...|:|.:|||||||:|.:||::||......||.|::||||||.||.||||||
Mouse   390 -EGAELDTD-AEAELELSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNF 452

  Fly   491 QGRAKHLRLTISEKGQCRVQHLWFPSIQEMLEHFRHNPIPLESGGTSDVTLTEWVHSHSRLNDPT 555
            ||:||||||:::..|||.||||||.|:.:||.||..:||||||||::|:||..:|.:.....||.
Mouse   453 QGKAKHLRLSLNGHGQCHVQHLWFQSVFDMLRHFHTHPIPLESGGSADITLRSYVRAQGPPPDPG 517

  Fly   556 TAAN----------HDSGQ--LNDLSTNGNGNGNGNGYDNGQGSSTASNAAGGTASGAAGGGHPS 608
            .|.|          ..:||  .:.|:|......:.:   ||.|:|::|    |::|.|.      
Mouse   518 PAPNTAAPVPACWTEPAGQHYFSSLATATCPPASPS---NGAGASSSS----GSSSSAT------ 569

  Fly   609 PRHCNEVITMNLSVRLKTNEIELPQEPTHVYFPEQVYFHLDPTTLTVHGSPPPAQNFLDQPHLRA 673
                                 .||..|..             ..|:.|......::.||      
Mouse   570 ---------------------SLPPRPAE-------------GPLSAHSRSNSTEHLLD------ 594

  Fly   674 SNASLQAAAHHQAGSSGNRHPSDGGSNSGGAGGGSGSSGGAECTGRAVDNQYSF 727
                        |.|.....|::            .:.|.|    |||:|||||
Mouse   595 ------------AASGATEEPTE------------ATLGRA----RAVENQYSF 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LnkNP_001287536.1 Phe_ZIP 67..125 CDD:462631 20/57 (35%)
PH_SH2B_family 202..313 CDD:269938 43/113 (38%)
SH2_SH2B_family 438..534 CDD:198209 58/95 (61%)
Sh2b2NP_061295.2 Phe_ZIP 17..73 CDD:462631 20/60 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 143..166 3/22 (14%)
PH_SH2B_family 186..301 CDD:269938 43/114 (38%)
SH2_SH2B2 401..496 CDD:198274 58/94 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 507..528 5/20 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 549..611 19/138 (14%)

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