DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5890 and rcvrn3

DIOPT Version :10

Sequence 1:NP_001356889.1 Gene:CG5890 / 43126 FlyBaseID:FBgn0039380 Length:229 Species:Drosophila melanogaster
Sequence 2:NP_957119.2 Gene:rcvrn3 / 572207 ZFINID:ZDB-GENE-040426-1661 Length:191 Species:Danio rerio


Alignment Length:182 Identity:54/182 - (29%)
Similarity:100/182 - (54%) Gaps:5/182 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 VPKPIPVALEDLCRQTKFTKQEIRVMYRGFKTECPEGVVHEDCFKDIYAKFFPHGNSSLYAHYVF 85
            :|:.|   |:||...|:|::.||...|..|:.:||.|.:....|::||.||||..:::.||.:||
Zfish     9 IPREI---LDDLKLTTRFSESEITQWYENFQKQCPTGRITLQQFEEIYGKFFPDSDATTYAQHVF 70

  Fly    86 KAFDVNCNGAISFRDLLVTLSTLLRGSVYERLRWTFKLYDLNGDGRISRGELSEIILAIHELM-- 148
            ::||.|.:|.:.|::.:|.|.....|....:|.|.|.|:|::.:|.:::.|:.|:..||.:|:  
Zfish    71 RSFDANDDGTLDFKEYVVALHMTSSGKSTLKLEWAFSLFDVDKNGYVTKPEVIELSQAIFKLIPK 135

  Fly   149 GRRPHQPEDDRKARDQVDRVFRKLDLNQDGIITIEEFLEACLKDDLVTRSLQ 200
            .::...|.|:.....:.::::...|...:..:...||:||....|...|.:|
Zfish   136 DKQTSLPNDESTPEKRAEKLWAIFDKKDNERVAEGEFIEAIQSSDDGLRLIQ 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5890NP_001356889.1 FRQ1 <80..188 CDD:444056 28/109 (26%)
rcvrn3NP_957119.2 FRQ1 42..178 CDD:444056 38/135 (28%)
EFh 65..125 CDD:238008 19/59 (32%)

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