DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5890 and vsnl1a

DIOPT Version :9

Sequence 1:NP_001356889.1 Gene:CG5890 / 43126 FlyBaseID:FBgn0039380 Length:229 Species:Drosophila melanogaster
Sequence 2:NP_001007367.1 Gene:vsnl1a / 492494 ZFINID:ZDB-GENE-041001-211 Length:191 Species:Danio rerio


Alignment Length:180 Identity:73/180 - (40%)
Similarity:112/180 - (62%) Gaps:2/180 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 KPIPVALEDLCRQTKFTKQEIRVMYRGFKTECPEGVVHEDCFKDIYAKFFPHGNSSLYAHYVFKA 87
            |..|..:|||.:.|:|.:.|::..|:||..:||.|.::.|.|:.:|.||||:|::|.:|.:.|:.
Zfish     7 KLTPEVMEDLVKNTEFNEHELKQWYKGFLKDCPTGRLNLDEFQQLYVKFFPYGDASKFAQHAFRT 71

  Fly    88 FDVNCNGAISFRDLLVTLSTLLRGSVYERLRWTFKLYDLNGDGRISRGELSEIILAIHELMGR-- 150
            ||.|.:|.|.||:.:..||...|||..::|.|.|.:|||:|||:|:|.|:.|||.||::::|.  
Zfish    72 FDKNGDGTIDFREFICALSITSRGSFEQKLNWAFNMYDLDGDGKITRVEMLEIIEAIYKMVGTVI 136

  Fly   151 RPHQPEDDRKARDQVDRVFRKLDLNQDGIITIEEFLEACLKDDLVTRSLQ 200
            .....||......:||::|.|:|.|.|..|::|||.||...|..:...||
Zfish   137 MMKMNEDGLTPEQRVDKIFSKMDKNNDDQISLEEFKEAAKSDPSIVLLLQ 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5890NP_001356889.1 FRQ1 29..192 CDD:227455 68/164 (41%)
vsnl1aNP_001007367.1 FRQ1 15..181 CDD:227455 68/165 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170576127
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000038
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X31
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.840

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