DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5890 and d-cup

DIOPT Version :9

Sequence 1:NP_001356889.1 Gene:CG5890 / 43126 FlyBaseID:FBgn0039380 Length:229 Species:Drosophila melanogaster
Sequence 2:NP_650235.1 Gene:d-cup / 41580 FlyBaseID:FBgn0038089 Length:219 Species:Drosophila melanogaster


Alignment Length:208 Identity:55/208 - (26%)
Similarity:80/208 - (38%) Gaps:47/208 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 DLCRQTKFTKQEIRVMYRGFKTECPEGVVHED----CFKDIYAKFFPHGNSSLYAHYVFKAFDVN 91
            ||....:| .|..:.:|.|...:....|...|    |...||.|:......|  |..:..:..||
  Fly     4 DLTMNDRF-NQRFQSVYGGLVPQIARLVPFNDSEVTCILMIYYKYSLQNGPS--ARRITSSQFVN 65

  Fly    92 CNGAISFR--------DLLVTL----------------STLLRGSVYER-LRWTFKLYDLNGDGR 131
            .  .|.|:        |.:|||                .|:|.....|| :.:.:.:||.||.| 
  Fly    66 I--VIGFQQLYDMDVVDRIVTLIAGGRKHVTPMEFVNYMTILMSRDMERKMEFAYMVYDKNGMG- 127

  Fly   132 ISRGELSEIILAIHELMGRRPHQPEDDRKAR---DQVDRVFRKLDLNQDGIITIEEFLEACLKDD 193
            |:|    |||.:..|    |....:||....   |.||.:..|.|.:|||.|:.||:....|:..
  Fly   128 INR----EIISSSVE----RFFVGDDDEVLEMRLDMVDFLLLKFDEDQDGYISFEEYRSIVLQQP 184

  Fly   194 LVTRSL-QMFDND 205
            .:...| .:|.:|
  Fly   185 RLLEFLGPIFPSD 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5890NP_001356889.1 FRQ1 29..192 CDD:227455 52/192 (27%)
d-cupNP_650235.1 EF-hand_7 114..180 CDD:290234 25/74 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45442300
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23055
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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