DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5890 and guca1c

DIOPT Version :10

Sequence 1:NP_001356889.1 Gene:CG5890 / 43126 FlyBaseID:FBgn0039380 Length:229 Species:Drosophila melanogaster
Sequence 2:XP_002940159.1 Gene:guca1c / 100497028 XenbaseID:XB-GENE-6039675 Length:188 Species:Xenopus tropicalis


Alignment Length:185 Identity:60/185 - (32%)
Similarity:97/185 - (52%) Gaps:19/185 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 EIRVMYRGFKTECPEG--VVHEDCFKDIYAKFFPHGNSSLYAHYVFKAFDVNCNGAISFRDLLVT 104
            |:...|..|..|||.|  .:||  ||::......:..::.|...||..||:|.:|.|.|.:.:..
 Frog    15 ELHKWYGKFMKECPSGQLSLHE--FKELLGLQGMNFEANRYIDQVFSTFDMNKDGFIDFLEFIAA 77

  Fly   105 LSTLLRGSVYERLRWTFKLYDLNGDGRISRGELSEIILAIHELMGRRPHQPEDDRKARDQVDRVF 169
            ::.:|||.:.::|:|.|||||.:|:|.|.|.||..|:.|:..:.|.|...||      :....||
 Frog    78 INLVLRGKIDQKLKWYFKLYDADGNGSIDRKELLSILTAVRAINGHRGMSPE------EFTSMVF 136

  Fly   170 RKLDLNQDGIITIEEFLEACLKD----DLVTRSLQMFDNDLXXQEGELEPGLRNS 220
            .|:|:|.||.:|:|||:....||    ::::::.     ||  ....::.|.|.|
 Frog   137 EKIDVNGDGELTLEEFINGIEKDEQLLEIISKTF-----DLSNVLKTIQNGRRRS 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5890NP_001356889.1 FRQ1 <80..188 CDD:444056 42/107 (39%)
guca1cXP_002940159.1 FRQ1 29..158 CDD:444056 47/136 (35%)

Return to query results.
Submit another query.