DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alpha4GT2 and LOC100493872

DIOPT Version :9

Sequence 1:NP_651434.3 Gene:alpha4GT2 / 43124 FlyBaseID:FBgn0039378 Length:395 Species:Drosophila melanogaster
Sequence 2:XP_002935118.2 Gene:LOC100493872 / 100493872 -ID:- Length:374 Species:Xenopus tropicalis


Alignment Length:318 Identity:85/318 - (26%)
Similarity:133/318 - (41%) Gaps:38/318 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 SKKIPVIPLLDVLKAKKQPSRGQNIFFHETTNFKRIEKSSVVQLTAREACAIESAALHNPGLTVF 147
            :.:||:....:.|:.::...:|..|||.|||:  |:|...|.      .||:||||...|...: 
 Frog    72 ANEIPINEATNNLRPEEILHQGNGIFFVETTD--RMEPPYVT------LCAVESAARIYPNRPI- 127

  Fly   148 VLFAGATHRPSSGDPL---IRALHNYKNIRLRHLNLWRYAAGTPIAKWLKSGKLFKSKFLFPHVS 209
            ..|.........||..   ||.|.:|.||.|..|.|......||:..|.:..|.....:.....|
 Frog   128 AFFMKGLPEDRDGDKAKYRIRTLSSYDNIYLFPLRLEEVFYDTPLLSWYRKVKPEHESYWTDVTS 192

  Fly   210 DLLRYVSLYKYGGLYLDLDVVVQQNLEKLP-PNFTGAESNISVACGVMKMSPGGLGHKIATMCLR 273
            |..|...::||||:|:|.|::   ::..:| .||..||||...:..:....|   .|..:...:.
 Frog   193 DASRLALIWKYGGIYMDNDII---SVRPVPLKNFVAAESNDVYSNSIFGCVP---HHMFSWRSME 251

  Fly   274 DLEANYNANKWGTNGPGVITRVVKKQ-CNTDNIKSVINNPKRCNGFKVFDANAFYAISWLQWK-- 335
            |...|||.:..|..||.:..|::||. |.....|  .....||....:.:.:.||.|....||  
 Frog   252 DFVQNYNGSILGHQGPALFARILKKVFCVLRGFK--YTEDVRCGNMTLTNPDRFYPIPESSWKKY 314

  Fly   336 ----DFFQPNRHNVTMKRVSKSPVIHVWNKFSKG-WKVKTKSNCAYTTLAKIHCPRSF 388
                |.|:|         .|.|..:|::...::| :.:...|......|.:.:||.::
 Frog   315 YEVVDQFRP---------FSSSYAVHLFENSNQGKYNMVPGSKTLVDRLYEQYCPYTY 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alpha4GT2NP_651434.3 Gly_transf_sug 129..241 CDD:303104 34/115 (30%)
Gb3_synth 265..391 CDD:282437 31/132 (23%)
LOC100493872XP_002935118.2 Gly_transf_sug 113..217 CDD:418730 33/107 (31%)
Gb3_synth 243..363 CDD:398326 31/130 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D503304at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.