DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4960 and reep6

DIOPT Version :10

Sequence 1:NP_651429.1 Gene:CG4960 / 43115 FlyBaseID:FBgn0039371 Length:174 Species:Drosophila melanogaster
Sequence 2:XP_009304084.1 Gene:reep6 / 447918 ZFINID:ZDB-GENE-040912-98 Length:213 Species:Danio rerio


Alignment Length:140 Identity:61/140 - (43%)
Similarity:89/140 - (63%) Gaps:0/140 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 TKAFDSLEEKTGVERVNIFVGSILFCAFYLVFGWCAQLLCNIIGVLYPAYISIHGIESSTKQDDI 95
            |...:.:|||||:::..:..|:......:|:.|:.|.|:||:||.:||||.||..|||..|:||.
Zfish    23 TDCLNKIEEKTGIKKRYLAYGAAGVTGAFLLLGYGASLICNLIGFVYPAYFSIKAIESPGKEDDT 87

  Fly    96 RWLIYWVTFGIFTVIEFYPSLLTSMIPFYWLLKCTFLIWCMLPTERNGSTLIYHKLVRPYFLKLH 160
            :||.|||.:|.|:|.||:..:.....|||::.||.||:|||.|...|||.::|..:|||:|||..
Zfish    88 QWLTYWVIYGFFSVGEFFSDIFLHWFPFYYVCKCLFLLWCMAPVSWNGSQVLYRHVVRPFFLKHE 152

  Fly   161 DPVDMMSAGV 170
            ..||.|.:.:
Zfish   153 AAVDGMVSNI 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4960NP_651429.1 TB2_DP1_HVA22 78..155 CDD:460820 38/76 (50%)
reep6XP_009304084.1 TB2_DP1_HVA22 70..147 CDD:460820 38/76 (50%)

Return to query results.
Submit another query.