DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4960 and Reep3

DIOPT Version :9

Sequence 1:NP_001287533.1 Gene:CG4960 / 43115 FlyBaseID:FBgn0039371 Length:174 Species:Drosophila melanogaster
Sequence 2:NP_001191844.1 Gene:Reep3 / 28193 MGIID:88930 Length:267 Species:Mus musculus


Alignment Length:93 Identity:32/93 - (34%)
Similarity:53/93 - (56%) Gaps:1/93 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 IIGVLYPAYISIHGIESSTKQDDIRWLIYWVTFGIFTVIEFYPSLLTSMIPFYWLLKCTFLIWCM 136
            :.|:|||||.|...:::...::.:||::||:.|.::||||.......:..|.|:.||..|:||.:
Mouse    13 VFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETVADQTLAWFPLYYELKIAFVIWLL 77

  Fly   137 LPTERNGSTLIYHKLVRPYFLKLHDPVD 164
            .|..| |::|||.|.:.|........:|
Mouse    78 SPYTR-GASLIYRKFLHPLLSSKEREID 104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4960NP_001287533.1 TB2_DP1_HVA22 66..154 CDD:281172 30/81 (37%)
Reep3NP_001191844.1 TB2_DP1_HVA22 7..94 CDD:281172 30/81 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 162..232
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1473891at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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