DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4960 and reep1

DIOPT Version :9

Sequence 1:NP_001287533.1 Gene:CG4960 / 43115 FlyBaseID:FBgn0039371 Length:174 Species:Drosophila melanogaster
Sequence 2:XP_004911337.1 Gene:reep1 / 100490027 XenbaseID:XB-GENE-940702 Length:280 Species:Xenopus tropicalis


Alignment Length:99 Identity:33/99 - (33%)
Similarity:55/99 - (55%) Gaps:1/99 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 AQLLCNIIGVLYPAYISIHGIESSTKQDDIRWLIYWVTFGIFTVIEFYPSLLTSMIPFYWLLKCT 130
            ::|:..|.|.|||||.|...::|...::.::|::||:.|.:|..:|.:..|.....|||:.||..
 Frog     7 SRLVVLIFGTLYPAYFSYKAVKSKDIKEYVKWMMYWIIFALFMTVETFTDLFLCWFPFYYELKIA 71

  Fly   131 FLIWCMLPTERNGSTLIYHKLVRPYFLKLHDPVD 164
            |:.|.:.|..: ||:|:|.|.|.|........:|
 Frog    72 FVAWLLSPYTK-GSSLLYRKFVHPTLSSKEKEID 104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4960NP_001287533.1 TB2_DP1_HVA22 66..154 CDD:281172 31/87 (36%)
reep1XP_004911337.1 TB2_DP1_HVA22 7..94 CDD:281172 31/87 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1473891at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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