DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4960 and reep3

DIOPT Version :9

Sequence 1:NP_001287533.1 Gene:CG4960 / 43115 FlyBaseID:FBgn0039371 Length:174 Species:Drosophila melanogaster
Sequence 2:XP_002940797.3 Gene:reep3 / 100487120 XenbaseID:XB-GENE-958749 Length:255 Species:Xenopus tropicalis


Alignment Length:105 Identity:34/105 - (32%)
Similarity:58/105 - (55%) Gaps:1/105 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 LVFGWCAQLLCNIIGVLYPAYISIHGIESSTKQDDIRWLIYWVTFGIFTVIEFYPSLLTSMIPFY 124
            :|.|...:.:..:.|:|||||.|...:.:...::.:||::||:.|.|:||:|....|..|..|.|
 Frog     1 MVSGIICKAVVLVFGMLYPAYYSYKAVRTKNVKEYVRWMMYWIVFAIYTVMETIADLTISWFPLY 65

  Fly   125 WLLKCTFLIWCMLPTERNGSTLIYHKLVRPYFLKLHDPVD 164
            :.||..|::|.:.|..| |::|:|.|.:.|........:|
 Frog    66 YELKIAFVVWLLSPYTR-GASLLYRKFLHPLLSSKEKEID 104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4960NP_001287533.1 TB2_DP1_HVA22 66..154 CDD:281172 30/87 (34%)
reep3XP_002940797.3 TB2_DP1_HVA22 19..95 CDD:367349 27/76 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1473891at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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