DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4956 and Patsas

DIOPT Version :10

Sequence 1:NP_651428.2 Gene:CG4956 / 43114 FlyBaseID:FBgn0039370 Length:302 Species:Drosophila melanogaster
Sequence 2:NP_001356957.1 Gene:Patsas / 34634 FlyBaseID:FBgn0029137 Length:613 Species:Drosophila melanogaster


Alignment Length:227 Identity:50/227 - (22%)
Similarity:81/227 - (35%) Gaps:82/227 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 IFLLCLIGLLFVYELCYVLPQITDPHGI----------WHKLCWFMGIYTVINILGNWWLGCMTN 101
            :||.....||:.|.: |::..|.....|          |:.:.|.           :|   .:.|
  Fly   368 LFLFLFSVLLWGYPM-YMIRAIPITWNILRRSHYCFIYWNAVMWI-----------SW---AIAN 417

  Fly   102 TSVDSLVLERQYPVAGEAH-------------------LWHYCSTCQKLVPPRSWHCSLCNICIL 147
            ......:     |::.:|:                   |...|.:|:.|.|.|:.||.:||.|:.
  Fly   418 RRDPGYI-----PLSSDAYYRAIKQIPYFDKLKKRNVMLTRLCHSCRCLRPLRAKHCRVCNRCVS 477

  Fly   148 KRDHHCTFFASCIGHKNQRYFLAFLFHLS--------------------------FGSGQALVYN 186
            ..||||.|..:|:|.:|:.:|  |||.||                          .|..:|:|:.
  Fly   478 YFDHHCPFIYNCVGLRNRMWF--FLFVLSVAVNCSFTIYFACYCVMIEGFTMLYVLGLIEAVVFC 540

  Fly   187 GILNWTNKAFLVVDPLLLMFQDTTQDADFKWK 218
            | |.|    .|....:|....:.|.:..|.:|
  Fly   541 G-LGW----ILTCTSILHACMNLTTNEMFNYK 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4956NP_651428.2 DHHC 123..251 CDD:396215 35/122 (29%)
PatsasNP_001356957.1 ANKYR 99..343 CDD:440430
ANK repeat 148..181 CDD:293786
ANK repeat 187..214 CDD:293786
ANK repeat 216..247 CDD:293786
ANK repeat 249..280 CDD:293786
ANK repeat 282..314 CDD:293786
DHHC 453..567 CDD:396215 34/120 (28%)
Blue background indicates that the domain is not in the aligned region.

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