DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4956 and GABPI

DIOPT Version :10

Sequence 1:NP_651428.2 Gene:CG4956 / 43114 FlyBaseID:FBgn0039370 Length:302 Species:Drosophila melanogaster
Sequence 2:NP_608741.1 Gene:GABPI / 33516 FlyBaseID:FBgn0031495 Length:420 Species:Drosophila melanogaster


Alignment Length:177 Identity:44/177 - (24%)
Similarity:80/177 - (45%) Gaps:28/177 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 ERQYPVAGEAHLWHYCSTCQKLVPPRSWHCSLCNICILKRDHHCTFFASCIGHKNQRYFLAFLFH 174
            ||...:.|:.::   |..|:|:.|.|::||.:|..|:.:||||..:...|||.:|..:::..|..
  Fly   256 ERSGLMHGQPNI---CEICRKVTPRRAYHCPVCGTCVKRRDHHSYWLNCCIGERNYVWYIVGLAL 317

  Fly   175 LSFGSGQALVYNGILNWTN--KAFLVVDPL---LLMFQDTT---QDADFKWKYTIANLFKLNLFL 231
                |..||:....|..|:  ..|:||.||   :|:..|.:   :..|....:.:|   ...|.:
  Fly   318 ----SEIALLLGANLTLTSICHPFMVVRPLGYPVLLPDDCSEVFEGFDLGISFVVA---CYALLI 375

  Fly   232 FGVPLFMFVFQMIMVYRNSTCYKMLDRSYDVGWRRNFDMVLGKRRFW 278
            .....|:...|..:.::.||.::         ::|..: ..|:.|.|
  Fly   376 SSYIAFILARQAYLWWKGSTLHE---------YKRTSN-AAGRNRIW 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4956NP_651428.2 DHHC 123..251 CDD:396215 35/135 (26%)
GABPINP_608741.1 DHHC 262..399 CDD:396215 38/155 (25%)

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