DRSC/TRiP Functional Genomics Resources

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Protein Alignment LpR2 and ldlrad3

DIOPT Version :10

Sequence 1:NP_001097928.1 Gene:LpR2 / 43105 FlyBaseID:FBgn0051092 Length:1064 Species:Drosophila melanogaster
Sequence 2:NP_001124079.1 Gene:ldlrad3 / 570705 ZFINID:ZDB-GENE-030131-1533 Length:314 Species:Danio rerio


Alignment Length:182 Identity:62/182 - (34%)
Similarity:76/182 - (41%) Gaps:44/182 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 FLNVSGKIGTPLDISLGLSNYCDEK-QFQCSTGECIPIRFVCDGSSDCPDHSDERLEECKFTEST 235
            ||..||.:...:......|.:|... .|.|:.|||:|....|||..||.|.||||  .|...:|.
Zfish     6 FLLGSGSVDCQVSPGGNSSWHCSAPGSFMCADGECVPAAGQCDGYPDCADRSDER--GCLKLKSK 68

  Fly   236 CSQEQFRCGNG-KCIPRRWVCDRENDCADGSDESTSQCRSHTCSPEEFACKSGEGECIPLSWMCD 299
            |:...|.|.|| .||..|:.|:...||.|||||  ..|.:|                 ||     
Zfish    69 CASTFFSCANGVHCIIGRFQCNGFRDCPDGSDE--DNCTAH-----------------PL----- 109

  Fly   300 QNKDCRDGSDEAQCNRTCRSDEFTCGNGRCIQNRFKCDDDDDCGDGSDEKNC 351
                            .|.|..|.|.||||:...|.|:..|:|.|.|||:||
Zfish   110 ----------------LCSSLRFHCANGRCVDRSFLCNGQDNCQDNSDEENC 145

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LpR2NP_001097928.1 LDLa 193..224 CDD:197566 14/31 (45%)
LDLa 235..267 CDD:197566 14/32 (44%)
LDLa 277..313 CDD:238060 2/35 (6%)
LDLa 356..388 CDD:197566
LDLa 400..432 CDD:197566
LDLa 442..476 CDD:238060
LDLa 484..517 CDD:197566
FXa_inhibition 527..562 CDD:464251
EGF_CA 564..594 CDD:214542
LY 675..715 CDD:214531
LY 717..760 CDD:214531
LY 763..803 CDD:214531
Ldl_recept_b 782..828 CDD:459654
Ldl_recept_b 824..866 CDD:459654
FXa_inhibition 877..918 CDD:464251
ldlrad3NP_001124079.1 LDLa 30..62 CDD:238060 16/33 (48%)
LDLa 69..104 CDD:238060 16/36 (44%)
LDLa 111..145 CDD:238060 16/33 (48%)
Blue background indicates that the domain is not in the aligned region.

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