DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LpR2 and lrp13

DIOPT Version :10

Sequence 1:NP_001097928.1 Gene:LpR2 / 43105 FlyBaseID:FBgn0051092 Length:1064 Species:Drosophila melanogaster
Sequence 2:XP_068074315.1 Gene:lrp13 / 562438 ZFINID:ZDB-GENE-130729-1 Length:1355 Species:Danio rerio


Alignment Length:819 Identity:268/819 - (32%)
Similarity:391/819 - (47%) Gaps:137/819 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 CDEKQFQCSTGE-CIPIRFVCDGSSDCPDHSDERLEECKFTESTCSQEQFRC-GNGKCIPRRWVC 255
            |....|||:.|: ||.:|.||||...|.|.|||.  .|...:..|:.   || ||.:|:|..:||
Zfish    75 CSVGHFQCAHGKMCIWLRQVCDGVPQCQDRSDEL--NCFKPDDGCAH---RCDGNTRCVPESFVC 134

  Fly   256 DRENDCADGSDESTSQCRSH-----------------------------------TCSPEEFACK 285
            |.:.||.|||||  :.|..:                                   .||.....|:
Zfish   135 DGDVDCVDGSDE--ANCEENPDDDDDDDEDLLDEKEEMTGEHEVSQNVPATKGPLRCSIASKLCR 197

  Fly   286 SGEGECIPLSWMCDQNKDCRDGSDEAQCNRTCRSDEFTCGNG----------------------- 327
            .|. :|:.|:.:||...||:|||||..|...|.|.:|.|.:|                       
Zfish   198 DGT-DCVMLNHVCDGELDCKDGSDEEDCPVQCESGQFQCAHGKKCIDRRQLCDGVPQCQDRSDEL 261

  Fly   328 -----------------RCIQNRFKCDDDDDCGDGSDEKNCGEKAKCGSNFFACKSGPCIPNQWV 375
                             ||:...|.||.|.||.|||||.||||:: |.|..:.|.||.|:.....
Zfish   262 NCFKPDDDCAHRCDENTRCVPESFVCDGDPDCVDGSDEANCGEES-CSSAEWQCSSGQCVSLSMR 325

  Fly   376 CDGDSDCRNGEDEMQNCTVSLLNFCQAGEFQCSDRITCLHKSWVCDGEADCPDGEDESQSNCLK- 439
            |||.||||:..|| ::|...  ..|.... :|.....||...|:||||.||.||.||  .||.: 
Zfish   326 CDGHSDCRDHSDE-EDCAEP--PPCSTNR-RCPKSHECLLDEWMCDGETDCKDGTDE--KNCKES 384

  Fly   440 -VSCRPDQFQCNDQS-CIAGHLTCNGKRDCADGSDEIMC-DISATPRTCNATTEFDCGGGLCIPN 501
             |.|...||.|:.:: ||.....|:|..||.|||||..| .:|..|..      |.||...|:..
Zfish   385 PVQCGEYQFSCSSKTQCIPQSWRCDGSEDCRDGSDESACASVSCPPHL------FQCGSSECVEF 443

  Fly   502 AKVCNRRKDCPNGEDEPAGKCGINECSSKNGGCMHQCVNLEVGYRCECHDGYKLGADQHTCVDID 566
            :::||...:|.:|.|| .|.|...:||.:. .|...|.:...|.||.|..|||...|...|.|:|
Zfish   444 SQLCNGVTNCLDGSDE-GGSCQTEKCSEQL-KCAQDCHSTPAGARCGCRMGYKPVDDGLRCADVD 506

  Fly   567 EC-ETPGICSQVCVNEIGAFKCECEAGYMRLLKNHTRCKASEGHASLLLARRHDIRKIALDRPEM 630
            || |.|.|||..|.|.:|:|:|.|..||:.....|: ||.: |...||.:.:.::..:.|....:
Zfish   507 ECVERPNICSHRCNNTLGSFQCSCSHGYVLEPDGHS-CKIT-GEPYLLASVQSEVFLLGLRSSSL 569

  Fly   631 TSIVNSTKA-ATALDFVFRTGMIFWSDVATQSIYKAPIDEGNDRTVVLTKSSVTSDGLAVDWIYN 694
            ..::::.|. ..:||:.::...::|.::.|.:|....:|:.|..|.:   ..:::|.|||||:..
Zfish   570 DILLSAEKRFVLSLDYDWQKQRVYWINLNTDTIKWLSLDQKNKGTFL---KGISADSLAVDWVAR 631

  Fly   695 HVYFTDTHKCTIELTNFEGSMGK-----VLVKDSLDIPRSIALDPIEGWMYWSDWGASPRIERAG 754
            ::|:||:....|.....:..:|:     :::.:.|...|||||.|.:|.|:||:.|...:|||||
Zfish   632 NLYWTDSENSQINAVRLDSEIGRSTDRVMILGEDLGQLRSIALMPQKGIMFWSETGDEAQIERAG 696

  Fly   755 MDGTHRTAIITYDVKWPNGITLDLVQKRLYWVDGKLNTISSSNYDGS--QRHQVLYSGEYLRHPF 817
            |||:.|..:::..::||..:|:|.:.:|:||.|.||..|.|:|.||.  :..|::.:..    ||
Zfish   697 MDGSDRRVLVSKSLRWPVSLTVDSLHQRIYWTDEKLKCIGSANIDGGDVKLLQLMETPS----PF 757

  Fly   818 SITTFEDYVYWTDWDKQAVFKANKFNGMDVEPVTATHMLE---HPMVVHVYHPYRQPDGVNHCQS 879
            |::.|.|.|||:|..:..:.:|:|..|...:.     :|:   .|..:.|.|...|.|..|.|:|
Zfish   758 SVSVFNDQVYWSDTKRGTIQRAHKTTGKQRQV-----LLKRPGQPFGLKVIHGLLQEDVSNPCES 817

  Fly   880 VNGHCSHLCLPAPRINERSPRISCACPTGLKLMPDGLMC 918
            ..  |||||:.||.:     :..|.|.|...|..|||.|
Zfish   818 QG--CSHLCVLAPGL-----KAVCKCSTQFLLDEDGLTC 849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LpR2NP_001097928.1 LDLa 193..224 CDD:197566 15/31 (48%)
LDLa 235..267 CDD:197566 15/32 (47%)
LDLa 277..313 CDD:238060 15/35 (43%)
LDLa 356..388 CDD:197566 13/31 (42%)
LDLa 400..432 CDD:197566 13/31 (42%)
LDLa 442..476 CDD:238060 15/34 (44%)
LDLa 484..517 CDD:197566 8/32 (25%)
FXa_inhibition 527..562 CDD:464251 12/34 (35%)
EGF_CA 564..594 CDD:214542 16/30 (53%)
LY 675..715 CDD:214531 10/39 (26%)
LY 717..760 CDD:214531 20/47 (43%)
LY 763..803 CDD:214531 15/41 (37%)
Ldl_recept_b 782..828 CDD:459654 18/47 (38%)
Ldl_recept_b 824..866 CDD:459654 11/44 (25%)
FXa_inhibition 877..918 CDD:464251 16/40 (40%)
lrp13XP_068074315.1 LDLa 36..71 CDD:238060
LDLa 75..110 CDD:238060 17/36 (47%)
LDLa 119..149 CDD:238060 16/34 (47%)
LDLa 196..224 CDD:238060 13/28 (46%)
LDLa 228..263 CDD:238060 5/34 (15%)
LDLa 272..302 CDD:238060 13/29 (45%)
LDLa 307..341 CDD:238060 15/34 (44%)
LDLa 352..381 CDD:238060 14/30 (47%)
LDLa 388..423 CDD:238060 15/34 (44%)
LDLa 428..459 CDD:197566 9/36 (25%)
FXa_inhibition 508..543 CDD:464251 15/35 (43%)
LY <623..649 CDD:214531 9/25 (36%)
Ldl_recept_b 681..719 CDD:459654 16/37 (43%)
LY 703..745 CDD:214531 15/41 (37%)
FXa_inhibition 1131..1163 CDD:464251
LDLa 1171..1203 CDD:197566
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.