DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LpR2 and Vldlr

DIOPT Version :10

Sequence 1:NP_001097928.1 Gene:LpR2 / 43105 FlyBaseID:FBgn0051092 Length:1064 Species:Drosophila melanogaster
Sequence 2:NP_037287.2 Gene:Vldlr / 25696 RGDID:3963 Length:873 Species:Rattus norvegicus


Alignment Length:878 Identity:364/878 - (41%)
Similarity:488/878 - (55%) Gaps:72/878 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 CDEKQFQCSTGECIPIRFVCDGSSDCPDHSDERLEECKFTESTCSQEQFRCGNGKCIPRRWVCDR 257
            ||..||||:.|.||.:.:.|||..||.|.|||:  .|  .:.||::..|.|.||:|:|.||.||.
  Rat    33 CDSSQFQCTNGRCITLLWKCDGDEDCTDGSDEK--NC--VKKTCAESDFVCKNGQCVPNRWQCDG 93

  Fly   258 ENDCADGSDESTSQCRSHTCSPEEFACKSGEGECIPLSWMCDQNKDCRDGSDEAQC-NRTCRSDE 321
            :.||.||||||..||...||...|.:|.:...:|||.||.||...||.:|.||..| |.||.:||
  Rat    94 DPDCEDGSDESPEQCHMRTCRINEISCGARSTQCIPESWRCDGENDCDNGEDEENCGNITCSADE 158

  Fly   322 FTCGNGRCIQNRFKCDDDDDCGDGSDEKNCGEKAKCGSNFFACKSGPCIPNQWVCDGDSDCRNGE 386
            |||.:|||:...|.|:..|||.|||||.:|.... ||::.|.|.:..|||..||||.|:||.:..
  Rat   159 FTCSSGRCVSRNFVCNGQDDCDDGSDELDCAPPT-CGAHEFQCSTSSCIPLSWVCDDDADCSDQS 222

  Fly   387 DE-MQNC--TVSLLNFCQAGEFQCSDRITCLHKSWVCDGEADCPDGEDESQSNCLKVSCRPDQFQ 448
            || ::.|  ...:...|...|.||... .|:||.|.|||:.||.||.||  .||...:||||||:
  Rat   223 DESLEQCGRQPVIHTKCPTSEIQCGSG-ECIHKKWRCDGDPDCKDGSDE--VNCPSRTCRPDQFE 284

  Fly   449 CNDQSCIAGHLTCNGKRDCADGSDEIMCDISATPRTCNATTEFDCGGGLCIPNAKVCNRRKDCPN 513
            |.|.|||.|...|||.|||.|||||:.|   .....|....:|.|..|.||...|||::.:||.:
  Rat   285 CEDGSCIHGSRQCNGIRDCVDGSDEVNC---KNVNQCLGPGKFKCRSGECIDITKVCDQEQDCRD 346

  Fly   514 GEDEPAGKCGINECSSKNGGCMHQCVNLEVGYRCECHDGYKLGADQHTCVDIDECETPGICSQVC 578
            ..|||..:|.||||...||||.|.|.:|.:||.|:|..|::| .|:.||.|||||:.||||||:|
  Rat   347 WSDEPLKECHINECLVNNGGCSHICKDLVIGYECDCAAGFEL-IDRKTCGDIDECQNPGICSQIC 410

  Fly   579 VNEIGAFKCECEAGYMRLLKNHTRCKASEGHASLLLARRHDIRKIALDRPEMTSIVNSTKAATAL 643
            :|..|.:||||..||...|.... |||.....||:...|.|||||.|:|.|...:|...:...||
  Rat   411 INLKGGYKCECSRGYQMDLATGV-CKAVGKEPSLIFTNRRDIRKIGLERKEYIQLVEQLRNTVAL 474

  Fly   644 DFVFRTGMIFWSDVATQSIYKAPIDEGNDRTVVLTKSSVTSDGLAVDWIYNHVYFTDTHKCTIEL 708
            |.......:||:|::.::|:.|.||:...|...:..:......:||||:|..:|:||....||.:
  Rat   475 DADIAAQKLFWADLSQKAIFSASIDDKVGRHFKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISV 539

  Fly   709 TNFEGSMGKVLVKDSLDIPRSIALDPIEGWMYWSDWGASPRIERAGMDGTHRTAIITYDVKWPNG 773
            ...:|:..|.|....|..|.|||:||:.|::||||||...:||:|||:|..|..::|.|::||||
  Rat   540 ATLDGTKRKFLFNSDLREPASIAVDPLSGFVYWSDWGEPAKIEKAGMNGFDRRPLVTEDIQWPNG 604

  Fly   774 ITLDLVQKRLYWVDGKLNTISSSNYDGSQRHQVLYSGEYLRHPFSITTFEDYVYWTDWDKQAVFK 838
            ||||||:.||||:|.||:.:||.:.:|..|..||.|.|:|.||.::|.|||.|||.|.:.:||:.
  Rat   605 ITLDLVKSRLYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLALTIFEDRVYWIDGENEAVYG 669

  Fly   839 ANKFNGMDVEPVTATHMLEHPMVVHVYHPYRQPDGVNHCQS--VNGHCSHLCLPAPRINERSPRI 901
            ||||.|.::  .|..:.|.....:.:||...||.|.|.|:.  .||.|.:||||||:||:.||:.
  Rat   670 ANKFTGSEL--ATLVNNLNDAQDIIIYHELVQPSGKNWCEEDMENGGCEYLCLPAPQINDHSPKY 732

  Fly   902 SCACPTGLKLMPDGLMCVEDLGIPTVRPTAPMHRTIEQSSNSTTKLPQDGYSETPVETKTGNNRT 966
            :|:||.|..|..:|..|                   :.:|...|      ||||.....|...||
  Rat   733 TCSCPNGYNLEENGREC-------------------QSTSTPVT------YSETKDVNTTDILRT 772

  Fly   967 D--TSNQVHKSDAESEND-----------YVEIALHVIASLAGTALVASVIYVVYRRCT-RAVNS 1017
            .  ....::.:.|.||..           .:.:.|.|:|::.|        |:::|... :.:.|
  Rat   773 SGLVPGGINVTTAVSEVSVPPKGTSAAWAILPLLLLVMAAVGG--------YLMWRNWQHKNMKS 829

  Fly  1018 MNFENPVYHKTTEDHFSLE----KNGTPHIYAA 1046
            |||:||||.||||:..|::    .....|.|.|
  Rat   830 MNFDNPVYLKTTEEDLSIDIGRHSASVGHTYPA 862

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LpR2NP_001097928.1 LDLa 193..224 CDD:197566 16/30 (53%)
LDLa 235..267 CDD:197566 17/31 (55%)
LDLa 277..313 CDD:238060 15/35 (43%)
LDLa 356..388 CDD:197566 14/31 (45%)
LDLa 400..432 CDD:197566 15/31 (48%)
LDLa 442..476 CDD:238060 23/33 (70%)
LDLa 484..517 CDD:197566 11/32 (34%)
FXa_inhibition 527..562 CDD:464251 15/34 (44%)
EGF_CA 564..594 CDD:214542 19/29 (66%)
LY 675..715 CDD:214531 11/39 (28%)
LY 717..760 CDD:214531 22/42 (52%)
LY 763..803 CDD:214531 22/39 (56%)
Ldl_recept_b 782..828 CDD:459654 23/45 (51%)
Ldl_recept_b 824..866 CDD:459654 14/41 (34%)
FXa_inhibition 877..918 CDD:464251 20/42 (48%)
VldlrNP_037287.2 LDLa 33..67 CDD:238060 18/35 (51%)
LDLa 71..103 CDD:197566 17/31 (55%)
Ldl_recept_a 111..149 CDD:395011 16/37 (43%)
Ldl_recept_a 153..188 CDD:395011 20/34 (59%)
LDLa 192..224 CDD:197566 14/32 (44%)
Ldl_recept_a 237..273 CDD:395011 17/38 (45%)
Ldl_recept_a 276..312 CDD:395011 23/35 (66%)
Ldl_recept_a 320..350 CDD:395011 10/29 (34%)
FXa_inhibition 360..394 CDD:464251 15/34 (44%)
EGF_CA 396..426 CDD:214542 19/29 (66%)
LDL-receptor class B 1 439..480 15/40 (38%)
LY 461..499 CDD:214531 9/37 (24%)
LDL-receptor class B 2 481..524 12/42 (29%)
Ldl_recept_b 481..522 CDD:459654 10/40 (25%)
LDL-receptor class B 3 525..567 15/41 (37%)
Ldl_recept_b 527..565 CDD:459654 13/37 (35%)
LDL-receptor class B 4 568..611 25/42 (60%)
Ldl_recept_b 568..608 CDD:459654 22/39 (56%)
LY 592..634 CDD:214531 22/41 (54%)
LDL-receptor class B 5 612..654 19/41 (46%)
LDL-receptor class B 6 655..697 16/43 (37%)
Ldl_recept_b 655..695 CDD:459654 14/41 (34%)
FXa_inhibition 706..749 CDD:464251 20/42 (48%)
Clustered O-linked oligosaccharides 751..790 12/44 (27%)
Endocytosis signal. /evidence=ECO:0000255 832..837 3/4 (75%)

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