DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LpR2 and M03E7.4

DIOPT Version :9

Sequence 1:NP_001097928.1 Gene:LpR2 / 43105 FlyBaseID:FBgn0051092 Length:1064 Species:Drosophila melanogaster
Sequence 2:NP_001343649.1 Gene:M03E7.4 / 187424 WormBaseID:WBGene00019756 Length:542 Species:Caenorhabditis elegans


Alignment Length:310 Identity:91/310 - (29%)
Similarity:122/310 - (39%) Gaps:91/310 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 NPLKF---------LNVSGKIGTPLDISLGLSNYCDEKQFQCSTGECIPIRFVCDGSSDCPDHSD 223
            ||:.|         |.|||.         |:      :|...:.|. ||..|       |  :|.
 Worm     3 NPIVFSFLISGALLLVVSGN---------GI------EQLMVAEGP-IPQNF-------C--NSS 42

  Fly   224 ERLEECKFTEST--------CSQEQFRCGNGKCIPRRWVCD----RENDCADG------------ 264
            :.|||....:||        ||:|.:.|        ||..|    ....|..|            
 Worm    43 DLLEEAGLIKSTLGQFLGYECSEEFYHC--------RWQSDGFRTYRKKCKPGLVYDVLGTQNCN 99

  Fly   265 SDESTSQCRSHT-----CSPEEFACKSGEGECIPLSWMCDQNKDCRDGSDEAQCNRTCRSDEFTC 324
            .|.:...|...:     |:..:|.|...| :|:|:|..||.:.||....||..| ..|.:.||.|
 Worm   100 YDYNVKSCGVRSGGPVQCNGTDFHCPLSE-QCVPMSSRCDGHYDCSMEEDEQNC-PLCTAGEFAC 162

  Fly   325 G-NGRCIQNRFKCDDDDDCGDGSDEKNCGEKAKCGSNFFAC-KSGPCIPNQWVCDGDSDCRNGED 387
            . :.:||....:|:...:|.||:||::|.   .||...|.| ||..|||....|||...|.:|||
 Worm   163 KVSEQCISLDRRCNGLIECDDGTDERDCD---VCGHGLFHCGKSNECIPMDERCDGRRQCPHGED 224

  Fly   388 EMQNCTVSLLNFCQAGE----FQCSDRITCLHKSWVCDGEADCPDGEDES 433
            ||         .|:..|    |.|..|...:..:.||||...||||.||:
 Worm   225 EM---------LCKKPETEKKFTCQSRDYEIPTNQVCDGMPQCPDGSDEA 265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LpR2NP_001097928.1 LDLa 193..224 CDD:197566 7/30 (23%)
LDLa 235..267 CDD:197566 10/55 (18%)
LDLa 277..313 CDD:238060 13/35 (37%)
LDLa 356..388 CDD:197566 15/32 (47%)
LDLa 400..432 CDD:197566 13/35 (37%)
LDLa 442..476 CDD:238060
LDLa 484..517 CDD:197566
FXa_inhibition 527..562 CDD:291342
EGF_CA 564..594 CDD:214542
LY 675..715 CDD:214531
LY 717..760 CDD:214531
LY 763..803 CDD:214531
FXa_inhibition 877..918 CDD:291342
M03E7.4NP_001343649.1 LDLa 117..152 CDD:238060 13/35 (37%)
LDLa 155..190 CDD:238060 12/34 (35%)
LDLa 193..228 CDD:238060 18/43 (42%)
LDLa 233..267 CDD:238060 13/33 (39%)
PHA03247 <353..496 CDD:223021
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.