DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LpR2 and clec-180

DIOPT Version :9

Sequence 1:NP_001097928.1 Gene:LpR2 / 43105 FlyBaseID:FBgn0051092 Length:1064 Species:Drosophila melanogaster
Sequence 2:NP_001294174.1 Gene:clec-180 / 177534 WormBaseID:WBGene00017991 Length:896 Species:Caenorhabditis elegans


Alignment Length:511 Identity:99/511 - (19%)
Similarity:161/511 - (31%) Gaps:160/511 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 HLLFITCILSISKFCNAAAVNAAHVT--------AATPTASEIMHNLSGSAL------LERLKAS 122
            ||:|...:|:::..   .|||.|..|        :....:|...|:.||..|      |.:.:|.
 Worm     3 HLIFTGFVLTLTAL---EAVNVAKSTDNDIVLKVSTEKHSSRDSHHFSGEWLESPWGDLYQFRAG 64

  Fly   123 TLGPTLDQ----------------------------LKHLAPAAANSISPGTGSGMGI--GMGHF 157
                  ||                            |.|.||.::.........|:..  |..|.
 Worm    65 ------DQNWLTAREHCLSLNADLAAIRNVEQLDWILSHYAPLSSRFAQRLVQIGLYAPEGQTHE 123

  Fly   158 GSSINSVLNGNPL-KFLNVSGKIGTPLDISL------GLSNYCDEKQFQCSTGECIPIRFVCDGS 215
            .    ..||||.: |.|..|.  |.|.|.|:      ||.|.  ||:......        |:.:
 Worm   124 W----KWLNGNEINKTLLWSS--GEPYDHSMEGRERCGLLNV--EKRVLDDVD--------CEST 172

  Fly   216 SDCPDHSDERLEECKFTESTCSQEQ----------------FRCG-----NGKCIPRRW---VCD 256
            |  |||..:|. .|:.|.....|:|                |..|     :...||..:   |..
 Worm   173 S--PDHHAQRY-ICQRTSENHKQQQRSNNYIWQKIENLFSFFGIGGSPTPHNATIPNDYEDEVLK 234

  Fly   257 RENDCADGSDESTSQCRSHTCSPEEFACKSGEGECIPLSWMCDQNKDCRDGSDEAQCNRTCRSDE 321
            .|......|....|.....|.|.||.:. |.....:|..          :||.|:...:..:..|
 Worm   235 NETSATVKSTVKFSDSEEETSSEEEESV-SKTLAALPKI----------EGSGESTALKELQEPE 288

  Fly   322 FTCGNGRCIQNRFKCDDDDDCGDGSDEKNCGEKAKCGSNFFACKSGPCIP--------------- 371
               |:|:.::.: ..:...|...|.||:...:................:|               
 Worm   289 ---GSGQIVEKK-AIETTGDLVSGVDEEKLDKMINKMEEMIKSIDDLTVPPAVLERTTVSTVVLK 349

  Fly   372 -NQWVCDGDSDCRNGEDEMQNCTVSLLNFCQAGEFQCSDRITCLHKSWVCDGEADCPDGEDESQS 435
             .:.|....:|.:..||:.:    :|.|  :..:.:.|:.|         :|:.|....:|..::
 Worm   350 KEEIVKQEKTDEKKVEDKKE----TLAN--ELNDNKISESI---------EGDFDQAQSKDMPKA 399

  Fly   436 NCLKVSCRPDQFQCNDQSCIAGHLTCNGKRDCADGSDEIMCDISATPRTCNATTEF 491
            :...    |.:..|:::...:|    :|:.|..|.|.|   .|...|...:...||
 Worm   400 DIEP----PKEEDCDEEGSGSG----SGEEDEKDESSE---KIELAPEKEDKIKEF 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LpR2NP_001097928.1 LDLa 193..224 CDD:197566 7/30 (23%)
LDLa 235..267 CDD:197566 9/55 (16%)
LDLa 277..313 CDD:238060 8/35 (23%)
LDLa 356..388 CDD:197566 4/47 (9%)
LDLa 400..432 CDD:197566 4/31 (13%)
LDLa 442..476 CDD:238060 8/33 (24%)
LDLa 484..517 CDD:197566 2/8 (25%)
FXa_inhibition 527..562 CDD:291342
EGF_CA 564..594 CDD:214542
LY 675..715 CDD:214531
LY 717..760 CDD:214531
LY 763..803 CDD:214531
FXa_inhibition 877..918 CDD:291342
clec-180NP_001294174.1 CLECT 59..184 CDD:214480 32/149 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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