DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL27 and RPL6B

DIOPT Version :9

Sequence 1:NP_001262966.1 Gene:RpL27 / 43103 FlyBaseID:FBgn0039359 Length:135 Species:Drosophila melanogaster
Sequence 2:NP_013553.1 Gene:RPL6B / 851169 SGDID:S000004440 Length:176 Species:Saccharomyces cerevisiae


Alignment Length:122 Identity:31/122 - (25%)
Similarity:51/122 - (41%) Gaps:29/122 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MRKIMKQGKIVIVLSGRYAGRKAIIVKTHDDGT-----PEKPFGHALVAGIDRYPRKVTKKM--- 57
            :|..:..|.::|:|:||:.|::.:.:|..:|.|     |.|..|..|.....||....:.|:   
Yeast    30 LRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVE 94

  Fly    58 ------------GKNKLKKKSKVKPFLKSLNYNHLMPTRYTAHDISFEKLSPKDLKD 102
                        .|.||.||.|     |..|   |.|.:.| .:|..|::..:.:.|
Yeast    95 GVNVEKFNVEYFAKEKLTKKEK-----KEAN---LFPEQQT-KEIKTERVEDQKVVD 142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL27NP_001262966.1 KOW 1..135 CDD:412330 31/122 (25%)
RPL6BNP_013553.1 KOW_RPL6 26..176 CDD:240520 31/122 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2163
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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