DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4730 and topi

DIOPT Version :10

Sequence 1:NP_651413.1 Gene:CG4730 / 43099 FlyBaseID:FBgn0039355 Length:392 Species:Drosophila melanogaster
Sequence 2:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster


Alignment Length:402 Identity:68/402 - (16%)
Similarity:130/402 - (32%) Gaps:126/402 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 QEKQTERERLIDNIIKDEQTANELVNNLLALKNGPDPAFLEQEREEQKRLLEHLHIQQNDLRKQE 363
            |||.|.::...:.:.       |.:..:.||:.      |..:::....::::..::...|..:.
  Fly    32 QEKHTSKQPACNCVA-------EAIRRVTALRK------LATQQDGDFTMVQNNEVKWAKLFMEF 83

  Fly   364 ILGA----MTNLLENEINIIQNFHNQRDQSSRSILEREYETNNLLNNVFLNYDRNRQDVIDQITC 424
            |:|.    .|....:..::|...|..:..:|..|     :.|..|..||..:.:|:....|    
  Fly    84 IIGTAYCQSTKCQAHSDDMIWYVHQAKLSNSFYI-----QGNQSLLQVFRRHSKNQPTPCD---- 139

  Fly   425 NEDIQKSAVAALIARNDSRTWGLVEQVRIVESQLAALTLYEIERKKVNQDDQILLDTLKMI---- 485
                            ||..|.....:.|:..|:.......:..|...|:.||:....:.:    
  Fly   140 ----------------DSYNWEETVCLNIIMQQIDFYVTCAVCTKTGPQNLQIIRKNCQRVFPSP 188

  Fly   486 -----EKQKESEQTDFWLLQYQRLLDRQPAEVSNDTASIDPVLGYQFLVNGVV----HC------ 535
                 :.:.|:|:..:..|.:                :||   |::.:.|.|:    .|      
  Fly   189 SRRRMDSKGENEEITYPKLYF----------------AID---GFEEVFNDVIVRDGECVCVELV 234

  Fly   536 ----------LPFL----------------SKLWQNKDKELCNIADQDLLNAGVQNPADRQGILQ 574
                      :.||                |..||...| |..:.|:......::.|..:.....
  Fly   235 ARDRQKTRESVVFLGSIRYEILKQVYDTKASSTWQWAQK-LMKVGDRRQEFVRMRGPQGKGYAEM 298

  Fly   575 SIANYYDYLNCKIDYPEGESVSGTPMATAPSDEGYS-----PEASGRRRSSSVELGLEVEPTPST 634
            ::|.   ..||..:         ||:...|.|  :|     .::.|:||.|...|.......||.
  Fly   299 AVAR---VPNCGYE---------TPLTENPID--FSELAGVEQSLGKRRMSETNLAGGTRMFPSR 349

  Fly   635 PLSGPSAGSVAR 646
            .::.||..|..|
  Fly   350 SIATPSHSSRGR 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4730NP_651413.1 zf-AD 46..124 CDD:462262
C2H2 Zn finger 183..203 CDD:275368
C2H2 Zn finger 212..232 CDD:275368
C2H2 Zn finger 240..260 CDD:275368
C2H2 Zn finger 268..289 CDD:275368
C2H2 Zn finger 296..318 CDD:275368 4/18 (22%)
C2H2 Zn finger 325..346 CDD:275368 3/20 (15%)
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275370 2/19 (11%)
C2H2 Zn finger 277..297 CDD:275370 2/19 (11%)
C2H2 Zn finger 431..453 CDD:275368
COG5048 <450..647 CDD:227381
C2H2 Zn finger 469..490 CDD:275368
C2H2 Zn finger 513..564 CDD:275368
C2H2 Zn finger 541..561 CDD:275368
C2H2 Zn finger 572..592 CDD:275368
C2H2 Zn finger 600..620 CDD:275368
zf-H2C2_2 612..637 CDD:463886
C2H2 Zn finger 628..646 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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