DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lgr3 and LGR5

DIOPT Version :10

Sequence 1:NP_733115.1 Gene:Lgr3 / 43098 FlyBaseID:FBgn0039354 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_003658.1 Gene:LGR5 / 8549 HGNCID:4504 Length:907 Species:Homo sapiens


Alignment Length:946 Identity:200/946 - (21%)
Similarity:330/946 - (34%) Gaps:307/946 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 VLLLAAVIFYLSLGPCPAAS----FACDNGTLCVPRRQMCDSRNDCADSSDENPVECGLLYGSKE 77
            |||...|:..|:.|.....|    ..|.....|.|..:|. .|.||:|            .|..|
Human     8 VLLSLPVLLQLATGGSSPRSGVLLRGCPTHCHCEPDGRML-LRVDCSD------------LGLSE 59

  Fly    78 IAD--KIVRNAIEKKQQRLISAVSNASGADSTTSMVPRNQSL-TLNMTCDIVTY-PKACQCGQGT 138
            :..  .:..:.::.....:...:.|.         :|..:.| .|.:..:.:|| ||..      
Human    60 LPSNLSVFTSYLDLSMNNISQLLPNP---------LPSLRFLEELRLAGNALTYIPKGA------ 109

  Fly   139 ILYCGRYAKLRRFPRLSSEVTNLIIIRNNLTLR---DNIFANFTRLQKLTLKYNNISRVPLGSFS 200
              :.|.|:            ..:::::|| .||   .....|...||.|.|..|:||.||...||
Human   110 --FTGLYS------------LKVLMLQNN-QLRHVPTEALQNLRSLQSLRLDANHISYVPPSCFS 159

  Fly   201 GLFHLERLELSHNNVSHLPHGVFLGLHSLQWLFLVNNHLHHLP-----------VEQLRFFR--- 251
            ||..|..|.|..|.::.:|...|..|.:||.:.|..|.:||:|           |..|...|   
Human   160 GLHSLRHLWLDDNALTEIPVQAFRSLSALQAMTLALNKIHHIPDYAFGNLSSLVVLHLHNNRIHS 224

  Fly   252 ----------RLEWLVLSRNRL--------TLRNVQ-----------LPK-----IPTLYEVYLD 282
                      .||.|.|:.|.|        ||.|::           :|:     .|:|..::..
Human   225 LGKKCFDGLHSLETLDLNYNNLDEFPTAIRTLSNLKELGFHSNNIRSIPEKAFVGNPSLITIHFY 289

  Fly   283 FNRIEYIGEETF-----------------------------------------------SQLDNL 300
            .|.|:::|...|                                               :||.||
Human   290 DNPIQFVGRSAFQHLPELRTLTLNGASQITEFPDLTGTANLESLTLTGAQISSLPQTVCNQLPNL 354

  Fly   301 HLLDLQHNLITHIHGRAFANLTNMRDIRLVGNPIKELSGETFLHNTRLEALSLA----------- 354
            .:|||.:||:..:  .:|:....::.|.|..|.|.|:..:||.....|.:|:||           
Human   355 QVLDLSYNLLEDL--PSFSVCQKLQKIDLRHNEIYEIKVDTFQQLLSLRSLNLAWNKIAIIHPNA 417

  Fly   355 ------LMPIHISSSLME--PL----NISFLNLTGIRYDHIDFEAINSMRNLTYI-------IYD 400
                  |:.:.:||:|:.  |:    .::.|.|||   :|. .:::.|..|...:       .|.
Human   418 FSTLPSLIKLDLSSNLLSSFPITGLHGLTHLKLTG---NHA-LQSLISSENFPELKVIEMPYAYQ 478

  Fly   401 --RFFYCSMTPRVR-----------------------------------------------MCKP 416
              .|..|....::.                                               .|.|
Human   479 CCAFGVCENAYKISNQWNKGDNSSMDDLHKKDAGMFQAQDERDLEDFLLDFEEDLKALHSVQCSP 543

  Fly   417 STDGVSSFQDLLSKPVLRYSAWVMATLTIAGNVLVLWGRF---IYRDENVAVTMVIRNLALADML 478
            |.......:.||...::|...|.:|.|.:..|.||....|   :|..   .:.::|..:|..:||
Human   544 SPGPFKPCEHLLDGWLIRIGVWTIAVLALTCNALVTSTVFRSPLYIS---PIKLLIGVIAAVNML 605

  Fly   479 MGF-YLVTIGVQDYRYRNEYYKVVLDWITSWQCTLIGTLAVSSSEVSMLILAFMSLERFLLI--- 539
            .|. ..|..||..:.: ..:.:....|.....|.:||.|::.:||.|:.:|...:|||...:   
Human   606 TGVSSAVLAGVDAFTF-GSFARHGAWWENGVGCHVIGFLSIFASESSVFLLTLAALERGFSVKYS 669

  Fly   540 -----ADPFRGHRSIGNRVMWLALICIWITGVGLAVAPVLLWRTSTLPYYGSYSGTCFPLHIHEA 599
                 ..||...:.|       .|:|..:   .|.:|.|.|...|.   ||: |..|.||...|.
Human   670 AKFETKAPFSSLKVI-------ILLCALL---ALTMAAVPLLGGSK---YGA-SPLCLPLPFGEP 720

  Fly   600 FPMGWLYSAFVFLGVNLLLLVMIAMLYTAL--------LISIWRTRSATPLTLLDCEFAVRFFFI 656
            ..||::.:..:   :|.|..:|:.:.||.|        |.:||           ||........:
Human   721 STMGYMVALIL---LNSLCFLMMTIAYTKLYCNLDKGDLENIW-----------DCSMVKHIALL 771

  Fly   657 VLTDFLCWVPIIVMKIWVFFNYN-ISDDIYAWLVVFVLPLNSAVNPLLYTFTTPKYRNQIFLRGW 720
            :.|:.:...|:..:......|.. ||.::..::::.|:||.:.:|||||....|.::..:     
Human   772 LFTNCILNCPVAFLSFSSLINLTFISPEVIKFILLVVVPLPACLNPLLYILFNPHFKEDL----- 831

  Fly   721 KKITSRKRAEAGNGNVATTTTGTATGSSQHPDDFTI 756
              ::.||:          |...|   .|:||...:|
Human   832 --VSLRKQ----------TYVWT---RSKHPSLMSI 852

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr3NP_733115.1 LDLa 32..65 CDD:238060 9/36 (25%)
LRR 85..389 CDD:443914 92/426 (22%)
leucine-rich repeat 181..204 CDD:275380 13/22 (59%)
leucine-rich repeat 205..228 CDD:275380 7/22 (32%)
leucine-rich repeat 229..252 CDD:275380 10/46 (22%)
leucine-rich repeat 253..275 CDD:275380 10/45 (22%)
leucine-rich repeat 276..299 CDD:275380 7/69 (10%)
leucine-rich repeat 300..323 CDD:275380 7/22 (32%)
leucine-rich repeat 324..347 CDD:275380 7/22 (32%)
7tmA_Relaxin_R 431..715 CDD:320265 73/304 (24%)
TM helix 1 432..458 CDD:320265 8/28 (29%)
TM helix 2 465..490 CDD:320265 8/25 (32%)
TM helix 3 510..540 CDD:320265 11/37 (30%)
TM helix 4 552..574 CDD:320265 4/21 (19%)
TM helix 5 603..632 CDD:320265 8/36 (22%)
TM helix 6 644..674 CDD:320265 4/29 (14%)
TM helix 7 683..708 CDD:320265 8/24 (33%)
LGR5NP_003658.1 LRRNT 33..65 CDD:396168 10/44 (23%)
leucine-rich repeat 68..91 CDD:275380 2/31 (6%)
LRR 92..477 CDD:443914 92/411 (22%)
leucine-rich repeat 92..115 CDD:275380 7/30 (23%)
leucine-rich repeat 116..139 CDD:275380 5/23 (22%)
leucine-rich repeat 140..163 CDD:275380 13/22 (59%)
leucine-rich repeat 164..187 CDD:275380 7/22 (32%)
leucine-rich repeat 188..211 CDD:275380 7/22 (32%)
leucine-rich repeat 212..235 CDD:275380 3/22 (14%)
leucine-rich repeat 236..258 CDD:275380 8/21 (38%)
leucine-rich repeat 259..282 CDD:275380 1/22 (5%)
leucine-rich repeat 283..304 CDD:275380 5/20 (25%)
leucine-rich repeat 307..353 CDD:275378 2/45 (4%)
leucine-rich repeat 354..375 CDD:275378 7/22 (32%)
leucine-rich repeat 376..389 CDD:275378 4/12 (33%)
leucine-rich repeat 400..423 CDD:275378 4/22 (18%)
leucine-rich repeat 445..459 CDD:275378 5/17 (29%)
7tmA_LGR5 558..831 CDD:320485 73/304 (24%)
TM helix 1 559..585 CDD:320485 8/25 (32%)
TM helix 2 592..617 CDD:320485 7/24 (29%)
TM helix 3 637..667 CDD:320485 11/29 (38%)
TM helix 4 679..701 CDD:320485 6/31 (19%)
TM helix 5 721..750 CDD:320485 8/31 (26%)
TM helix 6 759..789 CDD:320485 6/40 (15%)
TM helix 7 799..824 CDD:320485 8/24 (33%)

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