DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lgr3 and Lgr4

DIOPT Version :10

Sequence 1:NP_733115.1 Gene:Lgr3 / 43098 FlyBaseID:FBgn0039354 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_001285192.1 Gene:Lgr4 / 5740505 FlyBaseID:FBgn0085440 Length:809 Species:Drosophila melanogaster


Alignment Length:710 Identity:232/710 - (32%)
Similarity:347/710 - (48%) Gaps:72/710 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 CPAASFACDNGTLCVPRRQMCDSRNDCADSSDENPVECGLLYGSKEIADKIVRNAIEKKQQRLIS 96
            ||...|.|:....|||:|..||...||.|:|||  |.|     ..|:..|...:...|:.     
  Fly    89 CPGGYFHCNTTAQCVPQRANCDGSVDCDDASDE--VNC-----VNEVDAKYWDHLYRKQP----- 141

  Fly    97 AVSNASGADSTTSMVPRNQSLTLNMTCDIVTYPK---ACQCGQGTILYCGRYAKLRRFP-RL-SS 156
                          ..|:.:|.:. .|   .:|.   :|.| :|..:.| |:.:|...| || ..
  Fly   142 --------------FGRHDNLRIG-EC---LWPNENFSCPC-RGDEILC-RFQQLTDIPERLPQH 186

  Fly   157 EVTNLIIIRNNL-TLRDNIFANFTRLQKLTLKYNNISRVPLGSFSGLFH--LERLELSHNNVSHL 218
            ::..|.:..||. |:.:..|:....:..|.||:.:|..:...:|..|..  |..|.:..|.:.||
  Fly   187 DLATLDLTGNNFETIHETFFSELPDVDSLVLKFCSIREIASHAFDRLADNPLRTLYMDDNKLPHL 251

  Fly   219 PHGVFLGLHSLQWLFLVNNHLHHLPVEQLRFFRRLEWLVLSRNRLTLRNVQL-PKIPTLYEVYLD 282
            |...|...:.|..|.|..||||||........::|:.|.|..||:.....:: .::|.|..:||:
  Fly   252 PEHFFPEGNQLSILILARNHLHHLKRSDFLNLQKLQELDLRGNRIGNFEAEVFARLPNLEVLYLN 316

  Fly   283 FNRIEYIGEETFSQ-LDNLHLLDLQHNLITHIHGRAFANLTNMRDIRLVGNPIKELSGETFLHNT 346
            .|.::.:..:.|.: |.|||.|.|.:|.|..|....|. ...:|.:.|.||.:..:..|||.:.:
  Fly   317 ENHLKRLDPDRFPRTLLNLHTLSLAYNQIEDIAANTFP-FPRLRYLFLAGNRLSHIRDETFCNLS 380

  Fly   347 RLEALSLALMPIHISSSLMEPL---------NISFLNLTGIRYDHIDFEAINSMRNLTYIIYDRF 402
            .|:.|       |::.:.:|..         |:|.|.|||.|:..:|...:.::.:|.||.:..|
  Fly   381 NLQGL-------HLNENRIEGFDLEAFACLKNLSSLLLTGNRFQTLDSRVLKNLTSLDYIYFSWF 438

  Fly   403 FYCSMTPRVRMCKPSTDGVSSFQDLLSKPVLRYSAWVMATLTIAGNVLVLWGRFIYRD-ENVAVT 466
            ..||....||:|.|..||:||...||...:||.|.||||::.:.||:|||.||:.|:. .||..:
  Fly   439 HLCSAAMNVRVCDPHGDGISSKLHLLDNQILRGSVWVMASIAVVGNLLVLLGRYFYKSRSNVEHS 503

  Fly   467 MVIRNLALADMLMGFYLVTIGVQDYRYRNEYYKVVLDWITSWQCTLIGTLAVSSSEVSMLILAFM 531
            :.:|:||.:|.|||.||..|...|..:|.||.|....|..|..|...|.|:..|.:.|.|:|..:
  Fly   504 LYLRHLAASDFLMGIYLTLIACADISFRGEYIKYEETWRHSGVCAFAGFLSTFSCQSSTLLLTLV 568

  Fly   532 SLERFLLIADPFRGHRSIGNRVMWLALICIWITGVGLAVAPVLLWRTSTLPYYGSY----SGTCF 592
            :.:|.:.:..|.:...:...|:: |.|:.:|....|||.||:|     ..||:||:    :|.|.
  Fly   569 TWDRLMSVTRPLKPRDTEKVRIV-LRLLLLWGISFGLAAAPLL-----PNPYFGSHFYGNNGVCL 627

  Fly   593 PLHIHEAFPMGWLYSAFVFLGVNLLLLVMIAMLYTALLISIWRTRSATPLTLLDCE--FAVRFFF 655
            .||||:.:..||.|||.:|:.||.|.|:.|...|..:|.:|..:......|....|  .|.||..
  Fly   628 SLHIHDPYAKGWEYSALLFILVNTLSLIFILFSYIRMLQAIRDSGGGMRSTHSGRENVVATRFAI 692

  Fly   656 IVLTDFLCWVPIIVMKIWVFFNYNISDDIYAWLVVFVLPLNSAVNPLLYTFTTPKYRNQI 715
            ||.||..||:||||:|:.......||.|:||||.|.|||:|||:||:|||.||..::.|:
  Fly   693 IVTTDCACWLPIIVVKLAALSGCEISPDLYAWLAVLVLPVNSALNPVLYTLTTAAFKQQL 752

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr3NP_733115.1 LDLa 32..65 CDD:238060 15/32 (47%)
LRR 85..389 CDD:443914 81/322 (25%)
leucine-rich repeat 181..204 CDD:275380 6/22 (27%)
leucine-rich repeat 205..228 CDD:275380 7/22 (32%)
leucine-rich repeat 229..252 CDD:275380 9/22 (41%)
leucine-rich repeat 253..275 CDD:275380 5/22 (23%)
leucine-rich repeat 276..299 CDD:275380 6/23 (26%)
leucine-rich repeat 300..323 CDD:275380 8/22 (36%)
leucine-rich repeat 324..347 CDD:275380 7/22 (32%)
7tmA_Relaxin_R 431..715 CDD:320265 114/290 (39%)
TM helix 1 432..458 CDD:320265 14/25 (56%)
TM helix 2 465..490 CDD:320265 10/24 (42%)
TM helix 3 510..540 CDD:320265 8/29 (28%)
TM helix 4 552..574 CDD:320265 9/21 (43%)
TM helix 5 603..632 CDD:320265 13/28 (46%)
TM helix 6 644..674 CDD:320265 15/31 (48%)
TM helix 7 683..708 CDD:320265 17/24 (71%)
Lgr4NP_001285192.1 Ldl_recept_a 87..124 CDD:395011 17/36 (47%)
LRR 167..>430 CDD:443914 73/271 (27%)
leucine-rich repeat 188..211 CDD:275380 5/22 (23%)
leucine-rich repeat 212..235 CDD:275380 6/22 (27%)
leucine-rich repeat 238..261 CDD:275380 7/22 (32%)
leucine-rich repeat 262..285 CDD:275380 9/22 (41%)
leucine-rich repeat 286..309 CDD:275380 5/22 (23%)
leucine-rich repeat 310..334 CDD:275380 6/23 (26%)
leucine-rich repeat 335..357 CDD:275380 8/22 (36%)
leucine-rich repeat 358..381 CDD:275380 7/22 (32%)
leucine-rich repeat 382..405 CDD:275380 4/29 (14%)
leucine-rich repeat 406..427 CDD:275380 7/20 (35%)
7tmA_Relaxin_R 467..752 CDD:320265 114/290 (39%)
TM helix 1 468..494 CDD:320265 14/25 (56%)
TM helix 2 502..527 CDD:320265 10/24 (42%)
TM helix 3 547..577 CDD:320265 8/29 (28%)
TM helix 4 588..610 CDD:320265 9/22 (41%)
TM helix 5 638..667 CDD:320265 13/28 (46%)
TM helix 6 681..711 CDD:320265 15/29 (52%)
TM helix 7 720..745 CDD:320265 17/24 (71%)

Return to query results.
Submit another query.