DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lgr3 and Rxfp1

DIOPT Version :10

Sequence 1:NP_733115.1 Gene:Lgr3 / 43098 FlyBaseID:FBgn0039354 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_997617.1 Gene:Rxfp1 / 381489 MGIID:2682211 Length:758 Species:Mus musculus


Alignment Length:743 Identity:254/743 - (34%)
Similarity:382/743 - (51%) Gaps:67/743 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FCLMTVVLLLAAVIFYLSLG-----PCPAASFACDNGTLCVPRRQMCDSRNDCADSSDENPVECG 70
            ||:..:..       |.:||     .||..||.|.|.:.|:|:...|:..:||.:.:||:  .||
Mouse     8 FCIFIIGK-------YFTLGSAQDVSCPLGSFPCGNMSRCLPQLLHCNGVDDCGNRADED--HCG 63

  Fly    71 LLYGSKEIADKIVRNAIEKKQQRLISAVSNASGADSTTSMVPRNQSLTLNMTCDIVTYPKACQCG 135
            ...|.....||...|..:         :::.:..::.||            .|.:.:.|..|.| 
Mouse    64 DNNGWSLQLDKYFANYYK---------LASTNSFEAETS------------ECLVGSVPMHCLC- 106

  Fly   136 QGTILYCGRYAKLRRFPRLSSEVTNLIIIRNNL-TLRDNIFANFTRLQKLTLKYNNISRVPLGSF 199
            :...|.|.. |.||..|.:||.||.:.:.||.: ||..|.|..:..||||.|:.|.|..|.:.:|
Mouse   107 RDLELDCDE-ANLRAVPSVSSNVTVMSLQRNFIRTLPPNGFRKYHELQKLCLQNNRIHSVSVSAF 170

  Fly   200 SGLFHLERLELSHNNVSHLPHGVFLGLHSLQWLFLVNNHLHHLPVEQLRFF--RRLEWLVLSRNR 262
            .||..|.:|.||||.::.|..|||..||.|:||.:.:|||..  :..|.|:  ..|..|||..|.
Mouse   171 RGLRSLTKLYLSHNRITFLKPGVFEDLHRLEWLIIEDNHLSR--ISPLTFYGLNSLILLVLMNNA 233

  Fly   263 LTLRNVQLPKIPTLYEV----YLDF--NRIEYIGEETFSQLDNLHLLDLQHNLITHIHGRAFANL 321
            ||    :||..|....:    :|||  |||..:...||...:||.:|.::.|.|.:::..||.:|
Mouse   234 LT----RLPDKPLCQHMPRLHWLDFEGNRIHNLRNLTFISCNNLTVLVMRKNKINYLNEHAFTHL 294

  Fly   322 TNMRDIRLVGNPIKELSGETFLHNTRLEALSLALMPIH-ISSSLMEPL-NISFLNLTGIRYDHID 384
            ..:.::.|..|.|:.|....|.....|..|:::..||. |..:..:.| .:..|:|.||...:|.
Mouse   295 QKLDELDLGSNKIENLPPNIFKDLKELSQLNISYNPIQKIEVNQFDCLAKLKSLSLEGIEISNIQ 359

  Fly   385 FEAINSMRNLTYIIYDRFFYCSMTPRVRMCKPSTDGVSSFQDLLSKPVLRYSAWVMATLTIAGNV 449
            ......:.||::|.:.:|.||...|.||.|||:|||:||.::||:..:.|...||::.:|..||:
Mouse   360 QRMFRPLINLSHIYFKKFQYCGYAPHVRSCKPNTDGISSLENLLASIIQRVFVWVVSAITCFGNI 424

  Fly   450 LVLWGRFIYRDENVAVTMVIRNLALADMLMGFYLVTIGVQDYRYRNEYYKVVLDWITSWQCTLIG 514
            .|:..|...|.||....|.|.:|..||.|||.||..||..|.::|.||.|....|:.|..|..:|
Mouse   425 FVICMRPYIRSENKLHAMSIISLCCADCLMGVYLFVIGAFDLKFRGEYNKHAQPWMESVHCQFMG 489

  Fly   515 TLAVSSSEVSMLILAFMSLERFLLIADPFRGHRSIGNRVMWLALICIWITGVGLAVAPVLLWRTS 579
            :||:.|:|||:|:|.|::||:::.|..|||..|....|.: ..||.|||.|..:|.|| |..:..
Mouse   490 SLAILSTEVSVLLLTFLTLEKYICIVYPFRCLRPRKCRTI-TVLIFIWIIGFIVAFAP-LGNKEF 552

  Fly   580 TLPYYGSYSGTCFPLHIHEAFPMG-WLYSAFVFLGVNLLLLVMIAMLYTALLISIWRTRSATPLT 643
            ...|||: :|.|||||..:....| .:||..:|||:||:..::|...|.::..|:  .:|:..:|
Mouse   553 FKNYYGT-NGVCFPLHSEDTGSTGAQIYSVVIFLGINLVAFIIIVFSYGSMFYSV--HQSSVTVT 614

  Fly   644 LL------DCEFAVRFFFIVLTDFLCWVPIIVMKIWVFFNYNISDDIYAWLVVFVLPLNSAVNPL 702
            .:      :...|.||||||.||.|||:||.::|........|.|.|.:|:|:|:||:|||:||:
Mouse   615 EIQKQVKKEVVLAKRFFFIVFTDALCWIPIFILKFLSLLQVEIPDSITSWVVIFILPINSALNPI 679

  Fly   703 LYTFTTPKYRNQIFLRGWKKITSRKRAE 730
            :||.||..::..|. :.|.....|:..:
Mouse   680 IYTLTTRPFKEMIH-QLWHNYRQRRSVD 706

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr3NP_733115.1 LDLa 32..65 CDD:238060 12/32 (38%)
LRR 85..389 CDD:443914 96/314 (31%)
leucine-rich repeat 181..204 CDD:275380 11/22 (50%)
leucine-rich repeat 205..228 CDD:275380 11/22 (50%)
leucine-rich repeat 229..252 CDD:275380 8/24 (33%)
leucine-rich repeat 253..275 CDD:275380 9/21 (43%)
leucine-rich repeat 276..299 CDD:275380 8/28 (29%)
leucine-rich repeat 300..323 CDD:275380 7/22 (32%)
leucine-rich repeat 324..347 CDD:275380 5/22 (23%)
7tmA_Relaxin_R 431..715 CDD:320265 113/290 (39%)
TM helix 1 432..458 CDD:320265 8/25 (32%)
TM helix 2 465..490 CDD:320265 12/24 (50%)
TM helix 3 510..540 CDD:320265 13/29 (45%)
TM helix 4 552..574 CDD:320265 10/21 (48%)
TM helix 5 603..632 CDD:320265 10/29 (34%)
TM helix 6 644..674 CDD:320265 15/35 (43%)
TM helix 7 683..708 CDD:320265 13/24 (54%)
Rxfp1NP_997617.1 LDLa 27..62 CDD:238060 13/36 (36%)
leucine-rich repeat 110..127 CDD:275378 7/17 (41%)
LRR 1 127..148 8/20 (40%)
leucine-rich repeat 128..151 CDD:275380 8/22 (36%)
LRR <143..>360 CDD:443914 75/222 (34%)
LRR 2 151..172 9/20 (45%)
leucine-rich repeat 152..175 CDD:275380 11/22 (50%)
LRR 3 175..196 10/20 (50%)
leucine-rich repeat 176..199 CDD:275380 11/22 (50%)
LRR 4 199..220 8/22 (36%)
leucine-rich repeat 200..223 CDD:275380 8/24 (33%)
LRR 5 223..244 10/24 (42%)
leucine-rich repeat 224..248 CDD:275380 10/27 (37%)
LRR 6 248..269 8/20 (40%)
leucine-rich repeat 249..272 CDD:275380 8/22 (36%)
LRR 7 272..293 7/20 (35%)
leucine-rich repeat 273..296 CDD:275380 7/22 (32%)
LRR 8 296..317 5/20 (25%)
leucine-rich repeat 297..320 CDD:275380 5/22 (23%)
LRR 9 320..341 5/20 (25%)
leucine-rich repeat 321..344 CDD:275380 6/22 (27%)
LRR 10 344..365 5/20 (25%)
leucine-rich repeat 345..366 CDD:275380 5/20 (25%)
7tmA_RXFP1_LGR7 406..692 CDD:320631 113/290 (39%)
TM helix 1 407..433 CDD:320631 8/25 (32%)
TM helix 2 440..465 CDD:320631 12/24 (50%)
TM helix 3 485..515 CDD:320631 13/29 (45%)
TM helix 4 526..548 CDD:320631 10/23 (43%)
TM helix 5 576..605 CDD:320631 9/28 (32%)
TM helix 6 621..651 CDD:320631 15/29 (52%)
TM helix 7 660..685 CDD:320631 13/24 (54%)

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