DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lgr3 and Rxfp2

DIOPT Version :10

Sequence 1:NP_733115.1 Gene:Lgr3 / 43098 FlyBaseID:FBgn0039354 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_001012493.1 Gene:Rxfp2 / 363866 RGDID:1309449 Length:737 Species:Rattus norvegicus


Alignment Length:759 Identity:255/759 - (33%)
Similarity:387/759 - (50%) Gaps:106/759 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LMTVVLLLAAVIFYLS----LGP-CPAASFACDNGTLCVPRRQMCDSRNDCADSSDENPVECGLL 72
            |:.||||:....|.|:    :.| ||...|.|.|.|.|:||...||..:||.:.:||:  .||  
  Rat     4 LLHVVLLMEVKDFTLAGSNMVAPLCPKGYFPCGNLTKCLPRAFHCDGVDDCGNGADED--NCG-- 64

  Fly    73 YGSKEIADKIVRNAIEKKQQRLISAVSNASGADSTTSMVPRN-QSLTLNMTCDIVTYPKACQCGQ 136
                                       :.||..:....|..| ..:||...|.:..||:.|.|.:
  Rat    65 ---------------------------DTSGWTTIFGTVHGNVNKVTLTEECFLSRYPQHCYCRE 102

  Fly   137 GTILYCGRYAKLRRFPRLSSEVTNLIIIRNNL-TLRDNIFANFTRLQKLTLKYNNISRVPLGSFS 200
            .. |.|.. |.|:..|::||.||.|.:.:|.: .|...:|:.:..|:|:.|::|.|:.:...:|.
  Rat   103 NE-LECVN-ADLKAVPKVSSNVTLLSLKKNKIHRLPVKVFSKYAELRKIFLQHNCITHISRRAFL 165

  Fly   201 GLFHLERLELSHNNVSHLPHGVFLGLHSLQWLFL------------------------VNNHLHH 241
            ||.:|:.|.||||.::.|..|:|..||.|.||.|                        |:|.|..
  Rat   166 GLHNLQILYLSHNCITSLRPGIFKDLHQLAWLILDDNPITRISQRSFTGLNSLFFLSMVSNRLEA 230

  Fly   242 LPVEQLRFFRRLEWLVLSRNRLT-LRNVQLPKIPTLYEVYLDFNRIEYIGEETFSQLDNLHLLDL 305
            ||........:|.|:.|:.|.:. :.|.......:|..::|..|:|.::.|:|||.|.||..|||
  Rat   231 LPERLCAQMPQLNWVDLANNGIKFITNSTFLTCDSLTVLFLPRNQIGFVPEKTFSSLKNLGELDL 295

  Fly   306 QHNLITHIHGRAFANLTNMRDIRLVGNPIKELSGETFLHNTRLEALSLALMPIHISSSLMEPLNI 370
            ..|:|..:....|::|..::.:.|..||:      .::|..:..:|.                .:
  Rat   296 SSNVIAKLPAHLFSDLHLLQKLNLSSNPL------LYVHKNQFGSLK----------------QL 338

  Fly   371 SFLNLTGIRYDHIDFEAINSMRNLTYIIYDRFFYCSMTPRVRMCKPSTDGVSSFQDLLSKPVLRY 435
            ..|:|..|...:|:......|:||::|....|.|||..|.||:|.|||||:||.:|||:..:||.
  Rat   339 QSLDLERIEIPNINTGMFRPMKNLSHIYLKTFRYCSYVPHVRICMPSTDGISSSEDLLANSILRV 403

  Fly   436 SAWVMATLTIAGNVLVLWGRFIYRDENVAVTMVIRNLALADMLMGFYLVTIGVQDYRYRNEYYKV 500
            |.||:|.:|.|||.||:..|.:.:.||....|.|:.|..||.|||.||.::||.|.:||.:|.|.
  Rat   404 SVWVIAFITCAGNFLVIAVRSLIKAENTTHAMSIKILCCADCLMGVYLFSVGVFDIKYRGQYQKY 468

  Fly   501 VLDWITSWQCTLIGTLAVSSSEVSMLILAFMSLERFLLIADPFRGHRSIGNRVMWLALICIWITG 565
            .|.|:.|..|.|:|.||..|:|||:|:|.|::||:||:|..||...| :|.|...:.|..||:.|
  Rat   469 ALLWMESVPCRLLGFLATLSTEVSVLLLTFLTLEKFLVIVFPFSNLR-LGKRQTAVVLASIWVAG 532

  Fly   566 VGLAVAPVLLWRTSTLPYYGSY---SGTCFPLHIHEAFPMGWL-YSAFVFLGVNLLLLVMIAMLY 626
            ..:|..|.     ::..|:|::   :|.|||||..:|...|.. ||..:|||||||..::|...|
  Rat   533 FLIAAVPF-----TSEDYFGNFYGKNGVCFPLHYDQAEDFGSRGYSLGIFLGVNLLAFLVITFSY 592

  Fly   627 TALLISIWRT--RSATPLTLLDCEFAV--RFFFIVLTDFLCWVPIIVMKIWVFFNYNISDDIYAW 687
            ..:..||.:|  ::|...:.:..|.||  ||||||.:|.:||:|:.|:||.......|...|.:|
  Rat   593 VTMFCSIQKTALQTAEVRSHIGKEVAVANRFFFIVFSDAICWIPVFVVKILSLLQVEIPGTITSW 657

  Fly   688 LVVFVLPLNSAVNPLLYTFTTPKYRNQIFLRGWKKITSRKRAEA 731
            :|||.||:|||:||:|||.||..:::::     |::..:.|.::
  Rat   658 IVVFFLPVNSALNPILYTLTTSLFKDKL-----KQLLHKHRRKS 696

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr3NP_733115.1 LDLa 32..65 CDD:238060 14/32 (44%)
LRR 85..389 CDD:443914 84/330 (25%)
leucine-rich repeat 181..204 CDD:275380 8/22 (36%)
leucine-rich repeat 205..228 CDD:275380 10/22 (45%)
leucine-rich repeat 229..252 CDD:275380 9/46 (20%)
leucine-rich repeat 253..275 CDD:275380 5/22 (23%)
leucine-rich repeat 276..299 CDD:275380 9/22 (41%)
leucine-rich repeat 300..323 CDD:275380 8/22 (36%)
leucine-rich repeat 324..347 CDD:275380 4/22 (18%)
7tmA_Relaxin_R 431..715 CDD:320265 122/291 (42%)
TM helix 1 432..458 CDD:320265 13/25 (52%)
TM helix 2 465..490 CDD:320265 12/24 (50%)
TM helix 3 510..540 CDD:320265 16/29 (55%)
TM helix 4 552..574 CDD:320265 7/21 (33%)
TM helix 5 603..632 CDD:320265 12/29 (41%)
TM helix 6 644..674 CDD:320265 16/31 (52%)
TM helix 7 683..708 CDD:320265 15/24 (63%)
Rxfp2NP_001012493.1 LDLa 28..63 CDD:238060 15/36 (42%)
leucine-rich repeat 96..121 CDD:275380 8/26 (31%)
LRR <120..>353 CDD:443914 67/254 (26%)
leucine-rich repeat 122..145 CDD:275380 6/22 (27%)
leucine-rich repeat 146..169 CDD:275380 8/22 (36%)
leucine-rich repeat 170..193 CDD:275380 10/22 (45%)
leucine-rich repeat 194..217 CDD:275380 4/22 (18%)
leucine-rich repeat 218..241 CDD:275380 5/22 (23%)
leucine-rich repeat 242..265 CDD:275380 5/22 (23%)
leucine-rich repeat 266..289 CDD:275380 9/22 (41%)
leucine-rich repeat 290..313 CDD:275380 8/22 (36%)
leucine-rich repeat 314..337 CDD:275380 5/44 (11%)
leucine-rich repeat 338..357 CDD:275380 4/18 (22%)
7tm_GPCRs 400..685 CDD:475119 122/290 (42%)
TM helix 1 401..425 CDD:320632 13/23 (57%)
TM helix 2 434..455 CDD:320632 10/20 (50%)
TM helix 3 479..501 CDD:320632 11/21 (52%)
TM helix 4 523..539 CDD:320632 5/15 (33%)
TM helix 5 571..594 CDD:320632 11/22 (50%)
TM helix 6 620..642 CDD:320632 11/21 (52%)
TM helix 7 653..678 CDD:320632 15/24 (63%)

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