DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lgr3 and Lhcgr

DIOPT Version :10

Sequence 1:NP_733115.1 Gene:Lgr3 / 43098 FlyBaseID:FBgn0039354 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_037110.1 Gene:Lhcgr / 25477 RGDID:3007 Length:700 Species:Rattus norvegicus


Alignment Length:705 Identity:149/705 - (21%)
Similarity:250/705 - (35%) Gaps:189/705 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 PKACQCGQGTILYC-GRYAKLRRFPRLSSEVTNLIIIRNNLTLRDNIFANFTRLQKLTL-KYNNI 191
            |:.|.|.....|.| |..|.|.|.     .:|.|.:    ..:....|.....:.|:.: :.:::
  Rat    35 PEPCDCAPDGALRCPGPRAGLARL-----SLTYLPV----KVIPSQAFRGLNEVVKIEISQSDSL 90

  Fly   192 SRVPLGSFSGLFHLERLELSH-NNVSHLPHGVFLGLHSLQWLFLVNNHLHHLPVEQLRFFRRLEW 255
            .|:...:|..|.:|..|.:.: .|:.::..|.|..|..|::|.:.|..:..||            
  Rat    91 ERIEANAFDNLLNLSELLIQNTKNLLYIEPGAFTNLPRLKYLSICNTGIRTLP------------ 143

  Fly   256 LVLSRNRLTLRNVQLPKIPTLYEVYLDFNRIEYIGEETFSQLDNLHLLDLQHNLITHIHGRAFAN 320
                         .:.||.:     .:||.|..|       .||||        ||.|.|.||..
  Rat   144 -------------DVTKISS-----SEFNFILEI-------CDNLH--------ITTIPGNAFQG 175

  Fly   321 LTNMR-DIRLVGNPIKELSGETFLHNTRLEALSLA----LMPIHISSSLMEPLNISFLNLTGIRY 380
            :.|.. .::|.||..:|:....| :.|.|.:|.|.    |..:| |.:.......|.|:::..:.
  Rat   176 MNNESVTLKLYGNGFEEVQSHAF-NGTTLISLELKENIYLEKMH-SGAFQGATGPSILDISSTKL 238

  Fly   381 DHIDFEAINSM--------------------------------------------RNLTYIIYDR 401
            ..:....:.|:                                            :|.::.|::.
  Rat   239 QALPSHGLESIQTLIALSSYSLKTLPSKEKFTSLLVATLTYPSHCCAFRNLPKKEQNFSFSIFEN 303

  Fly   402 FF---------------------------------YCSMTPRVRMCKPSTDGVSSFQDLLSKPVL 433
            |.                                 :||  |:...|.|..|..:..:|::....|
  Rat   304 FSKQCESTVRKADNETLYSAIFEENELSGWDYDYGFCS--PKTLQCAPEPDAFNPCEDIMGYAFL 366

  Fly   434 RYSAWVMATLTIAGNVLVLWGRFIYRDENVAVTMVIRNLALADMLMGFYLVTIGVQDYRYRNEYY 498
            |...|::..|.|.||:.||:.....|.:......::.||:.||..||.||:.|...|.:.:.:||
  Rat   367 RVLIWLINILAIFGNLTVLFVLLTSRYKLTVPRFLMCNLSFADFCMGLYLLLIASVDSQTKGQYY 431

  Fly   499 KVVLDWITSWQCTLIGTLAVSSSEVSMLILAFMSLERFLLIADPFRGHRSIGNRVMWLALICIWI 563
            ...:||.|...|...|...|.:||:|:..|..::|||:..|....:..:.:..|           
  Rat   432 NHAIDWQTGSGCGAAGFFTVFASELSVYTLTVITLERWHTITYAVQLDQKLRLR----------- 485

  Fly   564 TGVGLAVAPVLL--WRTSTL----PYYG--SYS--GTCFPLHIHEAFPMGWLYSAFVFLGVNLLL 618
                 ...|::|  |..|||    |..|  :|.  ..|.|:.:.......::.|..:   :|::.
  Rat   486 -----HAIPIMLGGWLFSTLIATMPLVGISNYMKVSICLPMDVESTLSQVYILSILI---LNVVA 542

  Fly   619 LVMIAMLYTALLISIWRTRSATPLTLLDCEFAVRFFFIVLTDFLCWVPIIVMKIWVFF------- 676
            .|:|...|..:..::.......|..  |.:.|.:...::.|||.|..||....|...|       
  Rat   543 FVVICACYIRIYFAVQNPELTAPNK--DTKIAKKMAILIFTDFTCMAPISFFAISAAFKVPLITV 605

  Fly   677 -NYNISDDIYAWLVVFVLPLNSAVNPLLYTFTTPKYRNQIFLRGWKKITSRKRAE 730
             |..|       |:|...|:||..||.||...|..::....|...:....::|||
  Rat   606 TNSKI-------LLVLFYPVNSCANPFLYAIFTKAFQRDFLLLLSRFGCCKRRAE 653

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr3NP_733115.1 LDLa 32..65 CDD:238060
LRR 85..389 CDD:443914 58/267 (22%)
leucine-rich repeat 181..204 CDD:275380 4/23 (17%)
leucine-rich repeat 205..228 CDD:275380 6/23 (26%)
leucine-rich repeat 229..252 CDD:275380 5/22 (23%)
leucine-rich repeat 253..275 CDD:275380 2/21 (10%)
leucine-rich repeat 276..299 CDD:275380 4/22 (18%)
leucine-rich repeat 300..323 CDD:275380 8/22 (36%)
leucine-rich repeat 324..347 CDD:275380 5/23 (22%)
7tmA_Relaxin_R 431..715 CDD:320265 76/301 (25%)
TM helix 1 432..458 CDD:320265 9/25 (36%)
TM helix 2 465..490 CDD:320265 9/24 (38%)
TM helix 3 510..540 CDD:320265 10/29 (34%)
TM helix 4 552..574 CDD:320265 2/21 (10%)
TM helix 5 603..632 CDD:320265 5/28 (18%)
TM helix 6 644..674 CDD:320265 9/29 (31%)
TM helix 7 683..708 CDD:320265 9/24 (38%)
LhcgrNP_037110.1 leucine-rich repeat 55..78 CDD:275380 5/31 (16%)
LRR_5 66..204 CDD:463839 39/183 (21%)
leucine-rich repeat 79..103 CDD:275380 4/23 (17%)
leucine-rich repeat 104..128 CDD:275380 6/23 (26%)
LRR 1 126..150 8/48 (17%)
leucine-rich repeat 129..150 CDD:275380 7/45 (16%)
LRR 2 152..175 14/37 (38%)
leucine-rich repeat 155..178 CDD:275380 12/37 (32%)
LRR 3 176..200 6/24 (25%)
leucine-rich repeat 179..202 CDD:275380 5/23 (22%)
LRR 4 202..224 6/22 (27%)
leucine-rich repeat 203..227 CDD:275380 6/24 (25%)
LRR 5 225..248 2/22 (9%)
leucine-rich repeat 228..248 CDD:275380 2/19 (11%)
LRR 6 250..271 0/20 (0%)
7tmA_LHCGR 365..638 CDD:320481 76/300 (25%)
TM helix 1 365..391 CDD:320481 9/25 (36%)
TM helix 2 398..423 CDD:320481 9/24 (38%)
TM helix 3 443..473 CDD:320481 10/29 (34%)
TM helix 4 485..507 CDD:320481 8/37 (22%)
TM helix 5 527..556 CDD:320481 5/31 (16%)
TM helix 6 566..596 CDD:320481 9/31 (29%)
TM helix 7 606..631 CDD:320481 11/31 (35%)
Blue background indicates that the domain is not in the aligned region.

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