DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lgr3 and LOC100494508

DIOPT Version :10

Sequence 1:NP_733115.1 Gene:Lgr3 / 43098 FlyBaseID:FBgn0039354 Length:765 Species:Drosophila melanogaster
Sequence 2:XP_002938964.2 Gene:LOC100494508 / 100494508 XenbaseID:XB-GENE-29082223 Length:713 Species:Xenopus tropicalis


Alignment Length:743 Identity:249/743 - (33%)
Similarity:381/743 - (51%) Gaps:69/743 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 MTVVLLLAAVIF----------YLSLGPCPAASFACDNGTLCVPRRQMCDSRNDCADSSDENPVE 68
            |.::|.||.::.          .|..|.||...|.|.|.::|:|:...|:...|||:.:||    
 Frog     1 MLLLLSLAPLLLSATESLMIPSNLDSGICPLGQFPCGNLSVCLPQLLHCNGHKDCANGADE---- 61

  Fly    69 CGLLYGSKEIADKIVRNAIEKK-QQRLISAVSNASGADSTTSMVPRNQSLTLNMT--CDIVTYPK 130
                           .|.::.. ..:|...:.:|.|          |:.:....|  |.:..||:
 Frog    62 ---------------ENCVDNSGWPKLFDTIQSARG----------NRKMQDEETHECMLDIYPE 101

  Fly   131 ACQCGQGTILYCGRYAKLRRFPRLSSEVTNLIIIRNNL-TLRDNIFANFTRLQKLTLKYNNISRV 194
            .|:|.: .::.|.... |...|.:||.||.|.:..|.: ||.|.||:.:..|:||.|:.|.:..:
 Frog   102 PCECWR-RMVNCSSQG-LHSVPPVSSNVTALNLKDNKIKTLHDGIFSRYQDLEKLLLQNNELHDI 164

  Fly   195 PLGSFSGLFHLERLELSHNNVSHLPHGVFLGLHSLQWLFLVNNHLHHLPVEQLRFFRRLEWLVLS 259
            ...:|||||.|:.|.||.|.:..|..|||..|.||:||.|.||.:..:..........|.:|.:.
 Frog   165 SRLAFSGLFKLKMLFLSQNRIRSLKAGVFKDLRSLEWLILDNNQVSKIVPGTFSGLESLYFLDML 229

  Fly   260 RN--RLTLRNVQLPKIPTLYEVYLDFNRIEYIGEETFSQLDNLHLLDLQHNLITHIHGRAFANLT 322
            .|  |...||....::|.|..:.|:.|:::.|....|.:.  :.:|.|:.|.|..|...|.:.:.
 Frog   230 NNSIREIPRNSICEEMPHLNWLDLEGNQMQTIHSSVFQEC--ITVLSLRRNNIRKIRKGALSQMN 292

  Fly   323 NMRDIRLVGNPIKELSGETFLHNTRLEALSLALMPI-HISSSLMEPL-NISFLNLTGIRYDHIDF 385
            .:.|:.|..|.|.|||...|.:...|:.|:::..|: ||..:..:.| |:..||:..|...:|..
 Frog   293 KLVDLDLSMNQIVELSPSLFTNLRDLQQLNISFNPLQHIQPNQFDLLSNLQSLNMEDIEIPNIHN 357

  Fly   386 EAINSMRNLTYIIYDRFFYCSMTPRVRMCKPSTDGVSSFQDLLSKPVLRYSAWVMATLTIAGNVL 450
            ...:|:.||::|.:.:|.|||..|.||.|||::||:|||::||:..:||...||||.:|..||:.
 Frog   358 RMFSSLVNLSHIYFKKFQYCSYAPHVRSCKPNSDGISSFENLLANILLRVFVWVMACVTCFGNLF 422

  Fly   451 VLWGRFIYRDENVAVTMVIRNLALADMLMGFYLVTIGVQDYRYRNEYYKVVLDWITSWQCTLIGT 515
            |:..|.....||...||.|::|..||.||||||..:|..|.:::.||.|....|:.||:|.|:|:
 Frog   423 VICMRSFIVTENCQHTMSIKSLCCADCLMGFYLFCLGAFDIKFQGEYNKHAQAWMESWECKLVGS 487

  Fly   516 LAVSSSEVSMLILAFMSLERFLLIADPFRGHRSIGNRVMWLALICIWITGVGLAVAPVLLWRTST 580
            ||:.|||||:::|.:|:||::|.|..|| .|...|.......|..||..|..:.|.|...:.|  
 Frog   488 LAMLSSEVSVMMLTYMTLEKYLCIVFPF-SHFRAGRGQTLCTLTAIWGLGFFITVIPFFSYDT-- 549

  Fly   581 LPYYGSY---SGTCFPLHIHEAFPMGWL-YSAFVFLGVNLLLLVMIAMLYTALLISIWRTRSAT- 640
               :|::   :|.||||........|.. ||..:|||:|||..|.|...|:::..||.:|.:.| 
 Frog   550 ---FGNFYGRNGVCFPLQSDSTEKYGARGYSVSIFLGLNLLAFVTIVFSYSSMFYSIHKTGAKTA 611

  Fly   641 PLTLLDCE--FAVRFFFIVLTDFLCWVPIIVMKIWVFFNYNISDDIYAWLVVFVLPLNSAVNPLL 703
            ..::|..|  .|.||||||.||.|||:||.::|........|...|.:|:|:|:||:|||:||:|
 Frog   612 ERSVLSREVTIAKRFFFIVFTDALCWIPIFLLKAVSLTEAEIPGTITSWIVIFILPINSALNPIL 676

  Fly   704 YTFTTPKYRNQIFLRGWKKITSRKRAEA 731
            ||.||..::.::     |:....||.|:
 Frog   677 YTLTTSSFQEKL-----KQCLQSKRQES 699

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr3NP_733115.1 LDLa 32..65 CDD:238060 12/32 (38%)
LRR 85..389 CDD:443914 89/311 (29%)
leucine-rich repeat 181..204 CDD:275380 9/22 (41%)
leucine-rich repeat 205..228 CDD:275380 10/22 (45%)
leucine-rich repeat 229..252 CDD:275380 6/22 (27%)
leucine-rich repeat 253..275 CDD:275380 6/23 (26%)
leucine-rich repeat 276..299 CDD:275380 5/22 (23%)
leucine-rich repeat 300..323 CDD:275380 6/22 (27%)
leucine-rich repeat 324..347 CDD:275380 8/22 (36%)
7tmA_Relaxin_R 431..715 CDD:320265 116/290 (40%)
TM helix 1 432..458 CDD:320265 11/25 (44%)
TM helix 2 465..490 CDD:320265 13/24 (54%)
TM helix 3 510..540 CDD:320265 15/29 (52%)
TM helix 4 552..574 CDD:320265 6/21 (29%)
TM helix 5 603..632 CDD:320265 12/29 (41%)
TM helix 6 644..674 CDD:320265 17/31 (55%)
TM helix 7 683..708 CDD:320265 14/24 (58%)
LOC100494508XP_002938964.2 LDLa 29..64 CDD:238060 13/53 (25%)
leucine-rich repeat 108..126 CDD:275378 4/18 (22%)
LRR <125..>355 CDD:443914 73/231 (32%)
leucine-rich repeat 127..150 CDD:275380 9/22 (41%)
leucine-rich repeat 151..174 CDD:275380 9/22 (41%)
leucine-rich repeat 175..198 CDD:275380 10/22 (45%)
leucine-rich repeat 199..222 CDD:275380 6/22 (27%)
leucine-rich repeat 223..247 CDD:275380 6/23 (26%)
leucine-rich repeat 248..269 CDD:275380 5/20 (25%)
leucine-rich repeat 271..293 CDD:275380 6/21 (29%)
leucine-rich repeat 294..317 CDD:275380 8/22 (36%)
leucine-rich repeat 318..341 CDD:275380 6/22 (27%)
leucine-rich repeat 342..363 CDD:275380 4/20 (20%)
7tm_GPCRs 403..688 CDD:475119 116/290 (40%)
TM helix 1 405..429 CDD:410628 11/23 (48%)
TM helix 2 438..459 CDD:410628 12/20 (60%)
TM helix 3 483..505 CDD:410628 11/21 (52%)
TM helix 4 527..543 CDD:410628 5/15 (33%)
TM helix 5 575..598 CDD:410628 11/22 (50%)
TM helix 6 623..645 CDD:410628 14/21 (67%)
TM helix 7 656..681 CDD:410628 14/24 (58%)

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