DRSC/TRiP Functional Genomics Resources

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Protein Alignment jigr1 and RGD1559962

DIOPT Version :9

Sequence 1:NP_001097920.1 Gene:jigr1 / 43093 FlyBaseID:FBgn0039350 Length:336 Species:Drosophila melanogaster
Sequence 2:XP_008756867.1 Gene:RGD1559962 / 498988 RGDID:1559962 Length:209 Species:Rattus norvegicus


Alignment Length:201 Identity:40/201 - (19%)
Similarity:68/201 - (33%) Gaps:71/201 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   197 PNGK--GYNHFAESYHRRHQNQ-PEYIISSPIVNPMRSNKRGSQH-----------LDD--HPSK 245
            |.||  .|..|.::....|:|: |:   ||  ||....:|:.|:.           .:|  ...|
  Rat     9 PRGKMSSYAFFVQTCREEHKNKHPD---SS--VNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDK 68

  Fly   246 RRVDDSLSISGYYPTQ---------PLAPLPPAYAKFRGFGEFMCHSLCDMPAAT---------- 291
            .|.|..:  ..|.|.:         |.||..|..|.|....|.......:.|..:          
  Rat    69 ARYDREM--KNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGE 131

  Fly   292 ----------------ALRLVQKFTRELVQSSLRNED----------SGSKEKTDEVDPVDQSSE 330
                            |.:|.:::.:::.....:.:.          :|||:|.   :|.|:..|
  Rat   132 MWSEQSAKDKQPYEQKAAKLKEEYEKDIAAYRAKGKSEVGKKGPGRPTGSKKKN---EPEDEEEE 193

  Fly   331 SQEEDE 336
            .:|:||
  Rat   194 EEEDDE 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jigr1NP_001097920.1 MADF 33..118 CDD:214738
RGD1559962XP_008756867.1 HMG-box 7..78 CDD:294061 18/75 (24%)
HMG_box 95..162 CDD:278906 8/66 (12%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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