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Protein Alignment jigr1 and Hmg20b
DIOPT Version :9
Sequence 1: | NP_001097920.1 |
Gene: | jigr1 / 43093 |
FlyBaseID: | FBgn0039350 |
Length: | 336 |
Species: | Drosophila melanogaster |
Sequence 2: | XP_006241006.1 |
Gene: | Hmg20b / 362825 |
RGDID: | 1309235 |
Length: | 344 |
Species: | Rattus norvegicus |
Alignment Length: | 193 |
Identity: | 40/193 - (20%) |
Similarity: | 67/193 - (34%) |
Gaps: | 65/193 - (33%) |
- Green bases have known domain annotations that are detailed below.
Fly 12 LPKGRGRPRATYAQTGEFDLGLIREYRS-----HP----------------VLYDRSNKRFKDKL 55
||.|...|...|.: .:.|.|. || .|.....:|:.|:.
Rat 92 LPNGPKAPVTGYVR-------FLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEA 149
Fly 56 ------YVAHIW---EQIAHKLGYDATSIRER-----------MTTLRNRYNIEKRRVENGLSTQ 100
|:..:| :..|:|:..: .|:|. |.||.|.: :.|:.|....
Rat 150 EKEKQQYLKELWAYQQSEAYKVCTE--KIQENKIKKEDSSSGLMNTLLNGH----KGVDCGDGFS 208
Fly 101 SSQWPLFESLQFLGDHIRPR----RSFKNMSVKEEDEETYEVDDCRSDSNGHMNSIKDELEDD 159
:...|:|.. :|| |..:.| |..:.|:|..|::........:| |||.::.||.:
Rat 209 TFDVPIFTE-EFL-DQNKAREAELRRLRKMNVAFEEQNAVLQRHTQS-----MNSARERLEQE 264
|
Known Domains:
Indicated by green bases in alignment.
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG5648 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.900 |
|
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