DRSC/TRiP Functional Genomics Resources

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Protein Alignment jigr1 and Hmg20a

DIOPT Version :9

Sequence 1:NP_001097920.1 Gene:jigr1 / 43093 FlyBaseID:FBgn0039350 Length:336 Species:Drosophila melanogaster
Sequence 2:XP_006243179.1 Gene:Hmg20a / 315689 RGDID:1564760 Length:350 Species:Rattus norvegicus


Alignment Length:120 Identity:27/120 - (22%)
Similarity:47/120 - (39%) Gaps:43/120 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   218 EYIISSPIVNPMRSNKRGSQHLDDHPSKRRVDDSLSISGYYPTQPLAPLPPAYAKFRGFGEFMCH 282
            |.::||..:.|:.:::.||:.          .:.|:::|.  |.|..|          :|.    
  Rat     5 ESLMSSSTLPPLSADEDGSKE----------SNGLAVTGL--THPEGP----------YGS---- 43

  Fly   283 SLCDMPAATALRLVQKFTRELVQSS-LRNEDSGSKEKTDEVDPVDQSSESQEEDE 336
                  |||:.....:|..:|.|.. |::|.|.:.|          .||.:.|||
  Rat    44 ------AATSTTNNPEFVEDLSQGQLLQSESSNAAE----------GSEQRPEDE 82

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jigr1NP_001097920.1 MADF 33..118 CDD:214738
Hmg20aXP_006243179.1 HMGB-UBF_HMG-box 106..171 CDD:238686
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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