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Protein Alignment jigr1 and Hmgb1

DIOPT Version :9

Sequence 1:	NP_001097920.1	Gene:	jigr1 / 43093	FlyBaseID:	FBgn0039350	Length:	336	Species:	Drosophila melanogaster
Sequence 2:	NP_001300823.1	Gene:	Hmgb1 / 15289	MGIID:	96113	Length:	215	Species:	Mus musculus

Alignment Length:	200	Identity:	38/200 - (19%)
Similarity:	67/200 - (33%)	Gaps:	62/200 - (31%)

- Green bases have known domain annotations that are detailed below.

  Fly   197 PNGK--GYNHFAESYHRRHQNQ-PEYIIS--------SPIVNPMRSNKRGSQHLDDHPSKRRVDD 250
            |.||  .|..|.::....|:.: |:..::        |.....|.:.::|.  .:|.....:...
Mouse     9 PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGK--FEDMAKADKARY 71

  Fly   251 SLSISGYYPTQ---------PLAPLPPAYA----------KFRG-------------FGEFMCHS 283
            ...:..|.|.:         |.||..|..|          |.:|             .||...::
Mouse    72 EREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 136

  Fly   284 LCD--MP-AATALRLVQKFTRELVQSSLRNEDSGSK--------------EKTDEVDPVDQSSES 331
            ..|  .| ...|.:|.:|:.:::.....:.:...:|              |:.||.|..|:..|.
Mouse   137 AADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEE 201

  Fly   332 QEEDE 336
            :||||
Mouse   202 EEEDE 206

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.