DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5071 and trim13

DIOPT Version :9

Sequence 1:NP_001303432.1 Gene:CG5071 / 43090 FlyBaseID:FBgn0039347 Length:680 Species:Drosophila melanogaster
Sequence 2:XP_004912024.2 Gene:trim13 / 100492997 XenbaseID:XB-GENE-961103 Length:411 Species:Xenopus tropicalis


Alignment Length:287 Identity:63/287 - (21%)
Similarity:110/287 - (38%) Gaps:68/287 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IQVPKELKSLLSCGLCHRPYDLATGLLPQELACRHSFCKKCVQRNTDHNSSECICNLCGYRTQLD 68
            :.|.:.|:..|:|.:|...:|     .|:.|.|.|:|||||:....:.||          ||.  
 Frog     1 MDVMEVLEEDLTCPICCSLFD-----DPRVLPCSHNFCKKCLDGVLEENS----------RTM-- 48

  Fly    69 GQQLPQSVTIMYLLRELPALILGRAMLDFSYKRSSTIEM--SIEEAPSSPSKNWVEDINVESFLA 131
             |..|.|.......:|.|.  :|...|..:|.....:|.  .|:.:|..|.              
 Frog    49 -QWRPSSFKCPTCRKETPT--MGVNGLQVNYLLKGIVEKYNKIKVSPKMPV-------------- 96

  Fly   132 TSAEHCFIHA-MPNSTWCHNCQRLLCRACSDVPLHQDHILVRQVDYHDLISQLLNSELRKIKSTA 195
                 |..|: .|.:.:|....:|:|.:|:....|:.|:.....|.:......|.:..:.::.. 
 Frog    97 -----CKEHSDQPLNIFCSTDLKLICGSCATTGEHKKHVFSSIGDAYIQEKSSLETLFQGVEEW- 155

  Fly   196 VHAKELATHEMDLLRELCEACYRVQLHVKREMLEHHSSMVAASMIGWHRLAERDLHRVGRLTGAK 260
             ::||:.:| :|.|    |:..|..||    .|...|..|.|.......|.|:           |
 Frog   156 -NSKEVHSH-LDTL----ESNKRKALH----SLAKESDKVKAYFEKLQYLLEQ-----------K 199

  Fly   261 MLQVLAHLATQR----QRYERQLDQVH 283
            ..::|:...|.:    |.|:.:::::|
 Frog   200 KNEILSDFETLKLAVMQAYDTEINKLH 226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5071NP_001303432.1 RING 16..59 CDD:238093 14/42 (33%)
cyclophilin 514..674 CDD:294131
trim13XP_004912024.2 RING-HC_TRIM13_C-V 8..64 CDD:319676 20/73 (27%)
Bbox2_TRIM13_C-XI 95..136 CDD:380825 10/59 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 44 1.000 Inparanoid score I5302
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

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