DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and HNRNPDL

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_112740.1 Gene:HNRNPDL / 9987 HGNCID:5037 Length:420 Species:Homo sapiens


Alignment Length:400 Identity:133/400 - (33%)
Similarity:180/400 - (45%) Gaps:79/400 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 NVPPPLQAAAAAAAAVPNLRFQTPIKAFACLTAATRSVSEMNATSLYAGNP-MENAAAAAAAAAA 80
            :|||||..:|.|                   |.|:||:|...........| :.:.|.::|...|
Human     9 HVPPPLFPSAPA-------------------TLASRSLSHWRPRPPRQLAPLLPSLAPSSARQGA 54

  Fly    81 GLIDPHHNRDLHQALVASIANNSVAAIGGG------LTTAAVLKSAAQQSQQAVQQNQNAVVVTP 139
            .....|........|...      |||.||      |.......|:.|:|..|....:.|     
Human    55 RRAQRHVTAQQPSRLAGG------AAIKGGRRRRPDLFRRHFKSSSIQRSAAAAAATRTA----- 108

  Fly   140 GLEQPKQEPAQQAALALLKENVNASAGAGQNNGQAAMGGSNKSGSSGRSTPSLSGGSGSDPAPGK 204
                 :|.|...:::.:  |::|.     .:|.:....||..:.|..:..            .||
Human   109 -----RQHPPADSSVTM--EDMNE-----YSNIEEFAEGSKINASKNQQD------------DGK 149

  Fly   205 LFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLD 269
            :|:|||||.||...|.||.:.||.|.|..|..||||.|||||||:.|::..:|:|||::..|.||
Human   150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLD 214

  Fly   270 GKKIDPKHATP---KNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRH 331
            ||.||||.|..   |..|      ||:||||:|.|||.|::|.||..||.:|...:.||.:|...
Human   215 GKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNER 273

  Fly   332 RGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQLLQKRIMLGTLGVQLPTAP 396
            |||.|:|:.:|:.|.::.|..:|.|.:.|.|.|.||||| |....|..||    |..|    .|.
Human   274 RGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE-VYRQQQQQQK----GGRG----AAA 329

  Fly   397 GQLIGARGAG 406
            |...|.||.|
Human   330 GGRGGTRGRG 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 42/73 (58%)
RRM2_MSI 292..365 CDD:240769 31/72 (43%)
HNRNPDLNP_112740.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..83 23/98 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 96..120 6/33 (18%)
RRM1_hnRPDL 149..224 CDD:410152 42/74 (57%)
RRM2_hnRPDL 234..308 CDD:409998 32/73 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 313..348 11/34 (32%)
Necessary for interaction with TNPO1. /evidence=ECO:0000269|PubMed:9524220 342..420
Necessary for its nuclear import and export 396..420
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 398..420
Blue background indicates that the domain is not in the aligned region.

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