DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and RBM39

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_909122.1 Gene:RBM39 / 9584 HGNCID:15923 Length:530 Species:Homo sapiens


Alignment Length:271 Identity:67/271 - (24%)
Similarity:123/271 - (45%) Gaps:51/271 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   219 LKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTV--------EKVLKVPIHTLDGKKIDP 275
            |:|:|:..|.|.||.::.|..::||:|..::.|.:..:|        ::||.|||       |..
Human   169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPI-------IVQ 226

  Fly   276 KHATPKNR-PRQANKTKK-------IFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHR 332
            .....||| ...||..:|       ::||.:..:.:.:.::..|..||.:|...::||.:|.|.:
Human   227 ASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSK 291

  Fly   333 GFGFVTFENEDVVDRVCE-IHFHTIKNKKVECKKAQPKEAVTPAAQLL------QKRIMLGT--- 387
            |:||:||.:.:...:..| ::...:..:.::......:...:.|:..|      :..|.|||   
Human   292 GYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGR 356

  Fly   388 ----------LGVQLPTAPGQLIGARGA----GVATMNPLAMLQNPTQLLQSPAAAAAAQQAAL- 437
                      .|:|:|.|..|.:...|:    .||..:.:..||  |:|.|...|:|.|..|:: 
Human   357 LQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQ--TRLSQQTEASALAAAASVQ 419

  Fly   438 -ISQNPFQVQN 447
             ::...||:.|
Human   420 PLATQCFQLSN 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 19/66 (29%)
RRM2_MSI 292..365 CDD:240769 17/80 (21%)
RBM39NP_909122.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..146
SF-CC1 46..518 CDD:273721 67/271 (25%)
Interaction with JUN. /evidence=ECO:0000250|UniProtKB:Q8VH51 291..406 24/116 (21%)
Activating domain. /evidence=ECO:0000250|UniProtKB:Q8VH51 291..355 12/63 (19%)
Interaction with ESR1 and ESR2. /evidence=ECO:0000250|UniProtKB:Q8VH51 355..406 12/52 (23%)
Interaction with NCOA6. /evidence=ECO:0000250|UniProtKB:Q8VH51 406..530 7/25 (28%)
Blue background indicates that the domain is not in the aligned region.

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