Protein Alignment msi and AT1G76460

DIOPT Version :10

• Sequence 1: NP_733108.2
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_565132.2
• Gene: AT1G76460 / 843979
• AraportID: AT1G76460
• Length: 285
• Species: Arabidopsis thaliana
• Alignment Length: 296
• Identity: 74/296 - (25%)
• Similarity: 110/296 - (37%)
• Gaps: 82/296 - (27%)

  Fly   282 NRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVD 346
            |.|.......|:||||::.:|.:|.::.:|.|:|.:.|.|::.|:.|.|.:|:|||||.:.:...
plant    15 NSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAAR 79

  Fly   347 RVCEIHFHTIKNKKVECKKA---QPKE----AVTPAAQLLQKRIMLGTLGVQLPTAP--GQLIGA 402
            |.|......|..::..|..|   :|:.    ||.|.        |.|.|   .|.:|  |.:.|.
plant    80 RACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPN--------MPGRL---RPASPYIGNVQGP 133

  Fly   403 RGA-----------------------GVATMNPLAMLQNPTQLLQSPAAAAAAQQAALISQNPFQ 444
            ||:                       ||....| ..:.:.:|.|.||          .:.|...|
plant   134 RGSLIGNYPYQQPLPYNYQQGVVYPYGVTAYGP-EYMYSQSQGLYSP----------YMGQQYLQ 187

  Fly   445 VQNAAAAASIANQAGFGKLLTTYPQ----TALHSVRYAPYSIPAS---------AATANAALMQA 496
            |.....|.: :....:|:|..|.|.    ||:..     ||:|.|         .:|...:.|.|
plant   188 VYGVPGAVN-SPVYQYGQLSQTIPNGHGYTAVQG-----YSVPGSHILQLGGPTVSTMTTSSMPA 246

  Fly   497 HQA------QSVAAAAHH---HQQQQQQQHHHQQQT 523
            .||      ...|....|   |..|..|.....|.|
plant   247 LQAPYPSGIPGPAPVQSHIIVHSPQFMQSTASDQTT 282

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_733108.2	RRM_SF	204..278	CDD:473069
		RRM2_MSI	292..365	CDD:240769	25/72 (35%)
AT1G76460	NP_565132.2	RRM_RBM24_RBM38_like	24..99	CDD:409818	25/74 (34%)
		PABP-1234	<37..245	CDD:130689	55/235 (23%)