Protein Alignment msi and RBP47C'

DIOPT Version :10

• Sequence 1: NP_733108.2
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_175181.1
• Gene: RBP47C' / 841159
• AraportID: AT1G47500
• Length: 434
• Species: Arabidopsis thaliana
• Alignment Length: 219
• Identity: 56/219 - (25%)
• Similarity: 82/219 - (37%)
• Gaps: 73/219 - (33%)

  Fly   163 ASAGAG----QNNGQAAMGGSNKSGSSGRSTPSLSGGSGSDPAPGKLFVGGLSWQTSSDKLKEYF 223
            ||...|    :|||                 |.||           :|||.|:...|...|.|.|
plant   183 ASFSTGEKRLENNG-----------------PDLS-----------IFVGDLAPDVSDALLHETF 219

  Fly   224 N-MFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKK-------IDPKHATP 280
            : .:.:|....::.|..|.||:|:||:.|.:.....|.:.    .::|.|       |.|  |||
plant   220 SEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT----EMNGVKCSSRAMRIGP--ATP 278

  Fly   281 KN----------RPRQA---------NKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQ 326
            :.          .|..|         |.|  |||||:....:.|::|..||:||.:....:.:.
plant   279 RKTNGYQQQGGYMPSGAFTRSEGDTINTT--IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG- 340

  Fly   327 QTKRHRGFGFVTFENEDVVDRVCE 350
                 :|.|||.|.|....:...|
plant   341 -----KGCGFVQFVNRPNAEEALE 359

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_733108.2	RRM_SF	204..278	CDD:473069	22/81 (27%)
		RRM2_MSI	292..365	CDD:240769	18/59 (31%)
RBP47C'	NP_175181.1	RRM1_SECp43_like	104..186	CDD:409780	2/2 (100%)
		RRM2_SECp43_like	198..277	CDD:409781	24/95 (25%)
		RRM3_NGR1_NAM8_like	305..376	CDD:409782	20/63 (32%)