Protein Alignment msi and RBP47C

DIOPT Version :10

• Sequence 1: NP_733108.2
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_175180.1
• Gene: RBP47C / 841157
• AraportID: AT1G47490
• Length: 432
• Species: Arabidopsis thaliana
• Alignment Length: 217
• Identity: 54/217 - (24%)
• Similarity: 81/217 - (37%)
• Gaps: 69/217 - (31%)

  Fly   163 ASAGAG----QNNGQAAMGGSNKSGSSGRSTPSLSGGSGSDPAPGKLFVGGLSWQTSSDKLKEYF 223
            ||...|    :|||                 |.||           :|||.||...|.:.|.|.|
plant   181 ASFSTGEKRLENNG-----------------PDLS-----------IFVGDLSPDVSDNLLHETF 217

  Fly   224 N-MFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKK-------IDPKHATP 280
            : .:.:|....::.|..|.||:|:||:.|.:.....|.:.    .::|.|       |.|  |||
plant   218 SEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT----EMNGVKCSSRAMRIGP--ATP 276

  Fly   281 K-----------------NRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQT 328
            :                 .||........|||||:....:.|::|..|::||.:....:.:.
plant   277 RKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG--- 338

  Fly   329 KRHRGFGFVTFENEDVVDRVCE 350
               :|.|||.|.|....:...|
plant   339 ---KGCGFVQFVNRPNAEEALE 357

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_733108.2	RRM_SF	204..278	CDD:473069	23/81 (28%)
		RRM2_MSI	292..365	CDD:240769	17/59 (29%)
RBP47C	NP_175180.1	RRM1_SECp43_like	102..184	CDD:409780	2/2 (100%)
		RRM2_SECp43_like	196..275	CDD:409781	25/95 (26%)
		RRM3_NGR1_NAM8_like	303..374	CDD:409782	17/61 (28%)