Protein Alignment msi and AT1G20880

DIOPT Version :10

• Sequence 1: NP_733108.2
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_564127.1
• Gene: AT1G20880 / 838681
• AraportID: AT1G20880
• Length: 274
• Species: Arabidopsis thaliana
• Alignment Length: 281
• Identity: 59/281 - (20%)
• Similarity: 111/281 - (39%)
• Gaps: 70/281 - (24%)

  Fly   204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTL 268
            |:|||||:|:|.|:.|:.:|:.:|.:.:.:::.|..|.||:|:||:||::|....:....|...:
plant    25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPII 89

  Fly   269 DGKKIDPK-----------------HATPKNRPRQANKTKKIFVGGVSQDTSA-------EEVKA 309
            ||::.:..                 ||..:.||...      :||.|......       .:...
plant    90 DGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSP------YVGSVQSPRGLHFGSHPYHQPPT 148

  Fly   310 YFSQFG---PVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEA 371
            |..|.|   |...|....|....:.:|| :..:..:..:    :::             ..|...
plant   149 YNYQQGVVYPYGVTPYGPDYMYSQSQGF-YGPYMGQQYL----QVY-------------GVPGAV 195

  Fly   372 VTPAAQLLQKRIMLGTLGVQLPTAPGQLIGA----RGAGVATM---NPLAMLQNPTQLLQSPAAA 429
            .:|..|       .|.|...:|.|.|...|.    .|:.|..:   :|::.:|:|     .|:.:
plant   196 NSPGYQ-------YGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGATSPMSAIQSP-----YPSPS 248

  Fly   430 AAAQQAALISQNPFQVQNAAA 450
            |...|..::...|..:|::.:
plant   249 APTHQRVIVQTPPQYIQSSGS 269

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_733108.2	RRM_SF	204..278	CDD:473069	25/90 (28%)
		RRM2_MSI	292..365	CDD:240769	11/82 (13%)
AT1G20880	NP_564127.1	RRM_RBM24_RBM38_like	24..99	CDD:409818	25/73 (34%)
		PABP-1234	<37..246	CDD:130689	46/244 (19%)