DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and AT1G13190

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_172778.1 Gene:AT1G13190 / 837877 AraportID:AT1G13190 Length:573 Species:Arabidopsis thaliana


Alignment Length:236 Identity:54/236 - (22%)
Similarity:89/236 - (37%) Gaps:63/236 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 QPKQEPAQ----QAALALLKENVNASAGAGQNNGQAAMGG-SNKSGSSGRSTPSLSGGSGSDPAP 202
            || |.|||    .|:|.....:|.|....|..:|....|. .|..|.:|.|.|.    :.||..|
plant    55 QP-QPPAQVNTSNASLQAQNSHVAAEPRMGIVSGGTVEGKYRNDGGHNGISGPD----TRSDVYP 114

  Fly   203 GKLFVG--GLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPI 265
            .....|  ||:....|:|:.:.    |:.|.||        .:.||.......|       ::|:
plant   115 QASSFGAKGLNIDIQSNKIAQQ----GSTTVVL--------NNHGFSGNAVNVP-------EMPV 160

  Fly   266 HTLDG-------------KKIDPKHATPKNRPRQA----NKTKKIFVGGVSQDTSAEEVKAYFSQ 313
            |...|             ..::|.....|: |.|:    |....:|||.:...|:..|:::..||
plant   161 HNSYGAPPQGAQQIPVSQMSVNPNVMMNKS-PTQSFVVDNGNTMLFVGELHWWTTDAEIESVLSQ 224

  Fly   314 FGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFH 354
            :|.|:|.....::.:.:.:|:              |::.|:
plant   225 YGRVKEIKFFDERVSGKSKGY--------------CQVEFY 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 16/88 (18%)
RRM2_MSI 292..365 CDD:240769 13/63 (21%)
AT1G13190NP_172778.1 RRM_CFIm68_CFIm59 204..277 CDD:409807 13/62 (21%)
PRP38_assoc 486..571 CDD:463734
Blue background indicates that the domain is not in the aligned region.

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