DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and AT5G55550

DIOPT Version :9

Sequence 1:NP_001247303.1 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_001331843.1 Gene:AT5G55550 / 835649 AraportID:AT5G55550 Length:507 Species:Arabidopsis thaliana


Alignment Length:453 Identity:115/453 - (25%)
Similarity:191/453 - (42%) Gaps:142/453 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   203 GKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHT 267
            ||||:||:||.|..::|::||:.:|.|.:.:||:|..|.|:||||||.|.:||..|:|: :..|.
plant     6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-MDKHI 69

  Fly   268 LDGK-----------------------------------------------KIDPKHATPKN--- 282
            :||:                                               :::.|.|.|::   
plant    70 IDGRTVCDFNHFSIFQQNKQSSDLIATSSICVFESSLNLCFSKCKDQIYVLQVEAKKAVPRDDQQ 134

  Fly   283 -RPRQAN-------------KTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRG 333
             ..|.|:             :||||||||:....:.||.|.||.|||.:.:.|::.|..|:|.||
plant   135 VLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRG 199

  Fly   334 FGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQL---LQKRIMLGTLGVQLPT- 394
            |||:||:::|.||||....||.:..|.||.|:|.||| ::|.:.:   |...:..|....::|. 
plant   200 FGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKE-ISPVSNIRSPLASGVNYGGGSNRMPAN 263

  Fly   395 ------APG---------------QLIGA-RGA----GVATMNPLAMLQNPT-----------QL 422
                  |||               .:||: |.|    |:...:.|::..||:           ::
plant   264 SYFNNFAPGPGFYNSLGPVGRRFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSCDGTSSTFGYNRI 328

  Fly   423 LQSP--AAAAAAQQAALISQN----PFQVQNAAAAASIANQAGFGKLLTTYPQTALHSVRYAPYS 481
            ..:|  ..|:..:..:.|..|    |:...|.....:..:.||.|     :.....:......:.
plant   329 PSNPYFNGASPNRYTSPIGHNRTESPYNSNNRDLWGNRTDTAGPG-----WNLNVSNGNNRGNWG 388

  Fly   482 IPASAATAN------------------------AALMQAHQAQSVAAAAHHHQQQQQQQHHHQ 520
            :|:|:|.:|                        .::.:.::..||.:.:...|||...|..|:
plant   389 LPSSSAVSNDNNGFGRNYGTSSGLSSSPFNGFEGSIGELYRGGSVYSDSTWQQQQLPSQSSHE 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_001247303.1 RRM1_hnRNPA_hnRNPD_like 205..276 CDD:240771 31/117 (26%)
RRM2_MSI 292..365 CDD:240769 35/72 (49%)
AT5G55550NP_001331843.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 1.000 Domainoid score I2908
eggNOG 1 0.900 - - E1_KOG4205
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000417
OrthoInspector 1 1.000 - - mtm1160
orthoMCL 1 0.900 - - OOG6_101082
Panther 1 1.100 - - O PTHR48032
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X310
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.770

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