DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment msi and Hnrnpab

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:XP_063126030.1 Gene:Hnrnpab / 83498 RGDID:69255 Length:332 Species:Rattus norvegicus


Alignment Length:252 Identity:101/252 - (40%)
Similarity:136/252 - (53%) Gaps:17/252 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 SAAQQSQQAVQQNQNAVVVTPGLEQPKQEPAQQAALALLKENVNASAGAGQNNGQAAMGGSNKSG 183
            :|.:|..:.....:|.....|..|.| .||:..||.        .:..||...|..|....|::|
  Rat     4 AAEEQPMETTGATENGHEAAPEGEAP-VEPSPGAAA--------PATPAGSGGGTTAAPSGNQNG 59

  Fly   184 SSGRSTPSLSGGSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGF 248
            :.|...    ..|.::...||:|||||||.||...||:||..||.|.|..|..||.|.|||||||
  Rat    60 AEGDQI----NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 120

  Fly   249 ITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQ 313
            |.|::..:|||||....|.|||:.||||.|....:    :..|||||||::.:.:.|:::.||.|
  Rat   121 ILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKK----DPVKKIFVGGLNPEATEEKIREYFGQ 181

  Fly   314 FGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 370
            ||.:|...:.:|.:..:.|||.|:||:.||.|.:|.|..|||:...|.|.|.|||||
  Rat   182 FGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKE 238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 44/73 (60%)
RRM2_MSI 292..365 CDD:240769 30/72 (42%)
HnrnpabXP_063126030.1 None

Return to query results.
Submit another query.