Protein Alignment msi and AT5G04600

DIOPT Version :10

• Sequence 1: NP_733108.2
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_196080.1
• Gene: AT5G04600 / 830337
• AraportID: AT5G04600
• Length: 222
• Species: Arabidopsis thaliana
• Alignment Length: 138
• Identity: 27/138 - (19%)
• Similarity: 59/138 - (42%)
• Gaps: 31/138 - (22%)

  Fly   275 PKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTF 339
            |....|...|...||...:::|.:.......|::|:|||||.|:...:..:::|.:.:.|||:.|
plant    44 PARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQF 108

  Fly   340 ENEDV-------------VDRVCEIH------------------FHTIKNKKVECKKAQPKEAVT 373
            |:.:|             ::.:.::|                  |..:.:.::|.::...:..:.
plant   109 EDPEVAEIAAGAMNDYLLMEHMLKVHVIEPENVKPNLWRGFKCNFKPVDSVQIERRQLNKERTLE 173

  Fly   374 PAAQLLQK 381
            ...::|||
plant   174 EHRKMLQK 181

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_733108.2	RRM_SF	204..278	CDD:473069	1/2 (50%)
		RRM2_MSI	292..365	CDD:240769	19/103 (18%)
AT5G04600	NP_196080.1	RRM_NIFK_like	61..134	CDD:409748	16/72 (22%)
		PABP-1234	80..>204	CDD:130689	19/102 (19%)